Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1076g00013 ATGCGAAGCTGCATCATCAACCTCTGGATCGTTGTCGCACTCTTCGTCCCTGTTCTCCTCTCTCTCAGAAGCCGTCGAGGCGAAACCCAAATCCAAACCACTCCTTCTTCATCTTCTGCTGCTTCTTTCTCTGATTCTTCTTCCTTCTCCGTGAAGCTTGCCAACACATTCCAATTCAACCAAAGGATCCGAGACGGCTCCAATCTTGAATATGATTTCTACAAGGACACGTGTCCCCAAGCCGAGGGCATTGTCCGTTCAGCGCTCACGCGCATTTACTTCGACCACAGGGACGTTGCTCCTGCCCTGCTTCGTCTCTTCTTCCACGATTGCTTCATCCAGGGATGTGATGCTTCGTTGCTGTTGGATGAGAACGATGGTAATAGTAACAGTTCGGTGGAGAAGCAGGCTGTGCCAAATCAGACACTGAGAGGTTTTGACAAGATTGACTTGATAAAGGAGGAGGTGGAGCAAGCGTGTCCTGGTGTTGTGTCTTGTGCTGATATAGTTTCTCTTGCAGCAAGGGATTCTGTTCTTCTGGCTGGTGGGCCATTCTATCCAGTTTTAACGGGAAGAAGAGACAACCATCAATCGTTTTTCGAAGAAGCAACTGCTCAGATTCCCAGACCAGATGATAATGTTACACGCACATTGCATCTCTTTAATCTCAGAGGATTTAATGCAAGAGAAACTGTCAGCCTTCTTGGAGGACACAACATTGGAAAAATTGGTTGTGATTTCATTCTGCAAAGGTTATACAACTTTCAGGACACAAGACAACCAGATCCCAGTATACCTCCTGATTTCCTTCGTCAGATGAGGCTAAATTGTCCAAACAATTCAAACACCAGCACCAATAAAGATGAGTTTATGACTTCAAAGCCTATGAGCAGTGATGTTCACTCTAAATCAGGGATGTCATACATGCAAGCATTGTCAACTTCAGTGTCATCAGGTTCAACATTTGACACTCACTACTACCAAAGTCTGCTAAGAGGAAGAGGACTACTTTTTGCTGATCAGCAACTGATGGCTGAGGATAAAACTGCTAAATTGGTCTCTGCTTATGCTTCAGATGATGGATCAACTTTTCGCATGGACTTTGCCAGAGTCATGTTGAAAATGTCTAATCTTGATGTTTTGACAGGACTTCAAGGTCAAGTTCGACTCAATTGCTCCAGACCTGTGACTTCTTGA 1197 0.4486 MRSCIINLWIVVALFVPVLLSLRSRRGETQIQTTPSSSSAASFSDSSSFSVKLANTFQFNQRIRDGSNLEYDFYKDTCPQAEGIVRSALTRIYFDHRDVAPALLRLFFHDCFIQGCDASLLLDENDGNSNSSVEKQAVPNQTLRGFDKIDLIKEEVEQACPGVVSCADIVSLAARDSVLLAGGPFYPVLTGRRDNHQSFFEEATAQIPRPDDNVTRTLHLFNLRGFNARETVSLLGGHNIGKIGCDFILQRLYNFQDTRQPDPSIPPDFLRQMRLNCPNNSNTSTNKDEFMTSKPMSSDVHSKSGMSYMQALSTSVSSGSTFDTHYYQSLLRGRGLLFADQQLMAEDKTAKLVSAYASDDGSTFRMDFARVMLKMSNLDVLTGLQGQVRLNCSRPVTS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1076g00013 398 SUPERFAMILY Heme-dependent peroxidases 69 394 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 Pfam Peroxidase 85 359 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 PRINTS Haem peroxidase superfamily signature 230 245 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 PRINTS Haem peroxidase superfamily signature 100 114 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 PRINTS Haem peroxidase superfamily signature 164 181 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 PRINTS Haem peroxidase superfamily signature 315 330 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 PRINTS Haem peroxidase superfamily signature 182 194 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 Gene3D - 72 393 - -
Vium1076g00013 398 ProSiteProfiles Plant heme peroxidase family profile. 68 396 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 PANTHER PEROXIDASE 25-RELATED 47 383 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 Gene3D Peroxidase, domain 2 208 375 - -
Vium1076g00013 398 ProSitePatterns Peroxidases active site signature. 100 111 IPR019794 GO:0004601
Vium1076g00013 398 MobiDBLite consensus disorder prediction 276 297 - -
Vium1076g00013 398 PRINTS Plant peroxidase signature 144 157 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 PRINTS Plant peroxidase signature 313 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 PRINTS Plant peroxidase signature 329 346 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 PRINTS Plant peroxidase signature 102 122 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 PRINTS Plant peroxidase signature 370 383 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 PRINTS Plant peroxidase signature 229 241 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 PRINTS Plant peroxidase signature 163 173 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 PRINTS Plant peroxidase signature 182 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 PRINTS Plant peroxidase signature 78 97 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1076g00013 398 CDD secretory_peroxidase 68 394 IPR033905 GO:0004601|GO:0042744
Vium1076g00013 398 FunFam Peroxidase 72 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1076g00013 Vium-Chr1076 66921 69420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1076g00013 65 394 Peroxidase AT4G33870 45.588 9.92e-99 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1076g00013 K00430 - gmx:100804973 684.1