Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1075g00009 ATCACCACCACCCCTTCTTTCTCTCTCTCCACCAACTTCACCTTCTCCATCACCAACACCACCACCTCCGCCACCCCCTCCTCCACCTTCTCCTTCTTCCTCAACTCCTCCCACACCCTCCTCTCCCTCAATTTCCACCCCAACCAAAACCATCTCACCCTCGACCTCAGCGTCTCCTCTATTACCAACTCCACTTCGGTTGATCTCAGCACCGACACTCCGATCACTTCTTGGGTTGATTATCACCACGCCGACAAGAAAATGCTTCAAGTTTTCTTGAACTACTCGTCACCAGCCACTTCCAAGCCTCAAAACCCTGTCTTGAGCGTTGACCTTGACCTTTATGAGTACTTTAAGGACAGTCTCTACTTGGGGTTTTCTGGTTCCACCCAAGGAAGCACCGAGCTTATCCAAGTCTTGAGTTGGAGTTTGGAGTTTGAGTCAAACTCGCACCTTCTGATCAATGGTTCTAGCAGCCCTTCTAATGTTGCTGTCGAGGGCATTCCTGTTTCTTCTAATTCCACTCAGGGTAGTAAGAATCGTGGTAAGAGATTTTTGTTCGGTCTTTGTGTTGCCATTGTTGGTCCTGCTTTTTTCTGCCTGGTGCTTGTGGTTTTGGGGTATGTTTCTTTTCTGAAGTGGCGTGGTTTGAGGAAGAAGAAAGGTTTTGGAACAGTGGGATGTTGTCCCAAAGAGTTTGGTTACAAGGAGGTGAAGTTGGCCACTAAGGGGTTTCATGCCTCAAGGGTAATTGGGAATGGGTCTTTTGGGACAGTGTACAAGGCTTTGTTTGAGTCTTCTGGGACAATAGCTGCAATCAAAAGGTCAAGACAGTACGATGGAAAAACTGAGTTTTTGGCAGAATTATCAATTATAGCTAGTTTGAGGCACAAGAATTTGGTTCAACTCCTAGGTTGGTGTGTTGAGAAGGGTGAGTTGTTGCTTGTGTATGAGTATATGCCAAATGGAAGCTTGGACAAGGTGCTTTACCAAGAATGTGAAGGTGGGAGTCCTAACCGTGTGTTGAGTTGGGTTCATAGGGTTAACATTGCTGTTGGGTTGGCTTCAGTTTTGAGTTATCTGCATCAGGAGTGTGAGCAGAGGGTGATTCACAGGGACATCAAAACAGGGAACATATTGCTAGATGGAAGCATGAATCCAAGATTGGGTGATTTTGGGTTGGCCAAGCTTATGGACCATGACAAGAGTCCTGTTTCAACACTAACTGCTGGGACAATGGGGTATCTTGCTCCTGAGTATCTTCAATGTGGAATGGCAACTGAGAAGACTGATGTGTTTAGCTATGGAGTGGTGGTGCTTGAGGTGGCTTGTGGGAGGAGGCCAATTGAGAGGGATGGACAAAAGATGGTGAATTTGGTGGATTGGGTTTGGGGGTTGCATTCTCAAGGGAGGATCATTGAAGCTGCTGACAGAAGGCTAAATGGGGAGTTTAAGGAAGGAGAAATGAAGAAGCTTTTGCTCTTGGGATTGAGTTGTGCTAACCCTGATAGTGCTCAGAGGCCATCCATGAGAAGAGTGTTGCAGATTCTCAACAATGAAGGAGGGGTGTCTCTTGTGGTACCTAAAGAAAAACCAACACTTACTTTTTCTTCTGGCTTGCCTTTGAGTCTTGAAGACATTGTTTCTGATGCTGAGGAAGAGTTGAACTCTGGCCAGGTTGTGTGTGAGATTAAAATTGATTGA 1704 0.4619 ITTTPSFSLSTNFTFSITNTTTSATPSSTFSFFLNSSHTLLSLNFHPNQNHLTLDLSVSSITNSTSVDLSTDTPITSWVDYHHADKKMLQVFLNYSSPATSKPQNPVLSVDLDLYEYFKDSLYLGFSGSTQGSTELIQVLSWSLEFESNSHLLINGSSSPSNVAVEGIPVSSNSTQGSKNRGKRFLFGLCVAIVGPAFFCLVLVVLGYVSFLKWRGLRKKKGFGTVGCCPKEFGYKEVKLATKGFHASRVIGNGSFGTVYKALFESSGTIAAIKRSRQYDGKTEFLAELSIIASLRHKNLVQLLGWCVEKGELLLVYEYMPNGSLDKVLYQECEGGSPNRVLSWVHRVNIAVGLASVLSYLHQECEQRVIHRDIKTGNILLDGSMNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQCGMATEKTDVFSYGVVVLEVACGRRPIERDGQKMVNLVDWVWGLHSQGRIIEAADRRLNGEFKEGEMKKLLLLGLSCANPDSAQRPSMRRVLQILNNEGGVSLVVPKEKPTLTFSSGLPLSLEDIVSDAEEELNSGQVVCEIKID 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1075g00009 567 SMART serkin_6 245 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1075g00009 567 Pfam Protein kinase domain 245 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1075g00009 567 Gene3D - 39 188 - -
Vium1075g00009 567 SUPERFAMILY Concanavalin A-like lectins/glucanases 46 267 IPR013320 -
Vium1075g00009 567 PANTHER - 8 519 - -
Vium1075g00009 567 FunFam L-type lectin-domain containing receptor kinase VIII.1 320 536 - -
Vium1075g00009 567 ProSiteProfiles Protein kinase domain profile. 245 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1075g00009 567 Gene3D Phosphorylase Kinase; domain 1 230 319 - -
Vium1075g00009 567 SUPERFAMILY Protein kinase-like (PK-like) 230 528 IPR011009 -
Vium1075g00009 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 369 381 IPR008271 GO:0004672|GO:0006468
Vium1075g00009 567 Gene3D Transferase(Phosphotransferase) domain 1 320 523 - -
Vium1075g00009 567 CDD STKc_IRAK 251 519 - -
Vium1075g00009 567 ProSitePatterns Protein kinases ATP-binding region signature. 251 274 IPR017441 GO:0005524
Vium1075g00009 567 Pfam Legume lectin domain 45 147 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1075g00009 Vium-Chr1075 55172 57424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1075g00009 3 553 Receptor kinase-like Gene Family AT5G55830 54.698 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium1075g00009 Pkinase 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1075g00009 - - vum:124824905 1066.6