Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10749g00004 ATGGGCACAAACGTGGTATCAGGTACTGGAACAGGCCTAGTGGTTTCAACTGGATCCAAGACTTACATGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAGCCACCAGATGATTTTGAAAAGGGTCTCAGATGGATATTTTACTTGATTATTTCTGTTATGCTAGTAGTTGTTACCATCCTGTTTGTGGTAAATTACTTGACATCTCTTGATTTGACCCAAAGTGTTCTTTTTGCCATCTCTGTTGCATCTGTTCTGAATCCTCAGATGCTTCCCCTCATCATTAACACATGCCTTGCAAAAGGAGCACTTGCTATGGCTAAAGACAGGTGTATAGTAAAGAGTTTAACATCTATACGCGATATGGGATCAATGGATATTCTTTGTATTGACAAGACAGGCTCCCTTACAATGAATCATGCAGTCATGGTTAATCATCTTGATTACAGGGGTTTACCCCAAGAAAACGTTTTACGCTATGCCTTCCTCAACTCTTACTTTAAGACTGATCAGAAGTATCCTCTGGATGATGCTATTCTTGCATTTGTATATTCAAATGGATTCAGGTTTCGGCCATCACTGTGGAGGAAGATAGAAGAGATTCCTTTTGACTTCAGAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGACAGACACTCAGAATTCTTTGGAAGGTTCATGGTAACAAAAGGAGCACTATTAGAAGTATTAAAAGTTTGTTCTTTCATTGAGAATTTCGAACAAGATGAAGTTTCCCCCTTCTCTTTCGATGATTATCAGCGTATTTTAAATCTTTCAGAAGATATTAGCAATGAAGGGTTAAGGATTCTAGGAGTAGCTATAAGGAAGCTGGAAATGCCGCAAACATGTGAAACAAGTAATGGAAGCAAGAGAGAAGACGAGGATATCGAAAAAGACATGGTGTTCCTTGGCCTCATAACATTTTTCGACCCACCTAAGGACACAGCAAAGCAAGCACTGTGGCGTTTGTGTGAGAAGGGAGTGAAAGCAAAGGTTTTAACTGGTGATTCCCTCTCCCTGACAACAAGGGTATGCAGAGAAGTTGGCATAAGCACCGATCATGTAATAACAGGTCCTGAACTAGAGCTACTTGACCAAGACACGTTCCATGAGACAGTTAAAAGAGCCACAGTACTAGCACGTCTTACTCCAATTCAGAAACTCCATGTGGTGCAATCCTTGCAAACAGTTGGAAACCATGTTGTTGGGTTCTTAGGAGATGGAGTGAATGATTCACTGGCTTTAGATGCTGCGAATGTAAGCATTTCTGTGGATTCAGGAGTAGCCATTGCAAAAGATATGGCAGATATTATCTTACTTGAGAAAGACCTGAACGTGCTTGTTGCGGGAGTGGAGCATGGTAGACTCACTTTTGGCAACACAATGAAGTATGTTAAGATGTCAGTGATTGCTAACTTGGGAAGTGTCATTTCACTCCTCATAGCAACACTGGTATTCAAGTATGAGCCCTTAACTTCTACACAGCTTCTGACACAGAATTTCATCTACAGTGTGGGACAGATTGCCATCGCCTGGGACAAGATGGATGAAGAGTATGTGAAGACACCTCACAAATCCTCAGAAAGAGGCTTGTCCATGTTCATACTGTGGAATGGATCAGTGTGCACTCTGTGTGATGTGGCAACACTCATGCTTCTTTGGTTTTATTACAAGGCTTACACTGATGTGACTCAGAAGTTTTTCCATTCAGCTTGGTTCATTGAAGGTCTTCTCTTGCAGACCCTCATCATCCACTTGATCAGGACTGAGAAAATCCCTTTCATGCAGGAGGTTGCATCTTGGCCTGTGATTTTCTCTACTGTTTTGACTTCTGCAATTGGAATTGCTCTTCCTTTCACACCCATTGGGAAGGTCATGGGATTCTCCCTTCTGCCCCTCTCATATTTCGGATTTTTGTTTATTCTTTTTCTTGGCTATTTTATAGTTGGCCATGTGGTTAAGAGACTTTACATATTGGTTTATAAGAGGTGGCTTTGA 2022 0.4115 MGTNVVSGTGTGLVVSTGSKTYMSTMFSKVGKKKPPDDFEKGLRWIFYLIISVMLVVVTILFVVNYLTSLDLTQSVLFAISVASVLNPQMLPLIINTCLAKGALAMAKDRCIVKSLTSIRDMGSMDILCIDKTGSLTMNHAVMVNHLDYRGLPQENVLRYAFLNSYFKTDQKYPLDDAILAFVYSNGFRFRPSLWRKIEEIPFDFRRRRVSVILETEDRHSEFFGRFMVTKGALLEVLKVCSFIENFEQDEVSPFSFDDYQRILNLSEDISNEGLRILGVAIRKLEMPQTCETSNGSKREDEDIEKDMVFLGLITFFDPPKDTAKQALWRLCEKGVKAKVLTGDSLSLTTRVCREVGISTDHVITGPELELLDQDTFHETVKRATVLARLTPIQKLHVVQSLQTVGNHVVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIATLVFKYEPLTSTQLLTQNFIYSVGQIAIAWDKMDEEYVKTPHKSSERGLSMFILWNGSVCTLCDVATLMLLWFYYKAYTDVTQKFFHSAWFIEGLLLQTLIIHLIRTEKIPFMQEVASWPVIFSTVLTSAIGIALPFTPIGKVMGFSLLPLSYFGFLFILFLGYFIVGHVVKRLYILVYKRWL 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10749g00004 673 Pfam E1-E2 ATPase 1 108 - -
Vium10749g00004 673 PANTHER CATION TRANSPORTING ATPASE 1 663 - -
Vium10749g00004 673 SUPERFAMILY HAD-like 304 461 IPR036412 -
Vium10749g00004 673 Gene3D - 1 17 - -
Vium10749g00004 673 Gene3D - 126 450 IPR023214 -
Vium10749g00004 673 SUPERFAMILY Calcium ATPase, transmembrane domain M 30 670 IPR023298 -
Vium10749g00004 673 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 124 320 IPR023299 GO:0000166
Vium10749g00004 673 Gene3D - 18 625 - -
Vium10749g00004 673 Pfam haloacid dehalogenase-like hydrolase 127 427 - -
Vium10749g00004 673 PRINTS Magnesium-transporting ATPase signature 42 58 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00004 673 PRINTS Magnesium-transporting ATPase signature 59 78 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00004 673 PRINTS Magnesium-transporting ATPase signature 521 534 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00004 673 PRINTS Magnesium-transporting ATPase signature 163 176 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00004 673 PRINTS Magnesium-transporting ATPase signature 471 486 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00004 673 PRINTS Magnesium-transporting ATPase signature 541 557 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00004 673 PRINTS Magnesium-transporting ATPase signature 626 647 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00004 673 PRINTS Magnesium-transporting ATPase signature 576 597 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00004 673 NCBIfam HAD-IC family P-type ATPase 379 492 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium10749g00004 673 NCBIfam magnesium-translocating P-type ATPase 1 672 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00004 673 Gene3D - 141 317 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10749g00004 Vium-Chr10749 1401 5637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10749g00004 2 565 Primary Pumps ATPases(2) AT1G10130 25.574 6.49e-49 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10749g00004 K01531 - pvu:PHAVU_002G260400g 1221.07