Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10749g00003 ATGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAGCCACCAGATGATTTTGAAAAGGGTCTCAGATGGATATTTTACTTGATTATTTCTGTTATGCTAGTAGTTGTTACCATCCTGTTTGTGGTAAATTACTTGACATCTCTTGATTTGACCCAAAGTGTTCTTTTTGCCATCTCTGTTGCATCTGTTCTGAATCCTCAGATGCTTCCCCTCATCATTAACACATGCCTTGCAAAAGGAGCACTTGCTATGGCTAAAGACAGGTGTATAGTAAAGAGTTTAACATCTATACGCGATATGGGATCAATGGATATTCTTTGTATTGACAAGACAGGCTCCCTTACAATGAATCATGCAGTCATGGTTAATCATCTTGATTACAGGGGTTTACCCCAAGAAAACGTTTTACGCTATGCCTTCCTCAACTCTTACTTTAAGACTGATCAGAAGTATCCTCTGGATGATGCTATTCTTGCATTTGTATATTCAAATGGATTCAGGTTTCGGCCATCACTGTGGAGGAAGATAGAAGAGATTCCTTTTGACTTCAGAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGACAGACACTCAGAATTCTTTGGAAGGTTCATGGTAACAAAAGGAGCACTATTAGAAGTATTAAAAGTTTGTTCTTTCATTGAGAATTTCGAACAAGATGAAGTTTCCCCCTTCTCTTTCGATGATTATCAGCGTATTTTAAATCTTTCAGAAGATATTAGCAATGAAGGGTTAAGGATTCTAGGAGTAGCTATAAGGAAGCTGGAAATGCCGCAAACATGTGAAACAAGTAATGGAAGCAAGAGAGAAGACGAGGATATCGAAAAAGACATGGTGTTCCTTGGCCTCATAACATTTTTCGACCCACCTAAGGACACAGCAAAGCAAGCACTGTGGCGTTTGTGTGAGAAGGGAGTGAAAGCAAAGGTTTTAACTGGTGATTCCCTCTCCCTGACAACAAGGGTATGCAGAGAAGTTGGCATAAGCACCGATCATGTAATAACAGGTCCTGAACTAGAGCTACTTGACCAAGACACGTTCCATGAGACAGTTAAAAGAGCCACAGTACTAGCACGTCTTACTCCAATTCAGAAACTCCATGTGGTGCAATCCTTGCAAACAGTTGGAAACCATGTTGTTGGGTTCTTAGGAGATGGAGTGAATGATTCACTGGCTTTAGATGCTGCGAATGTAAGCATTTCTGTGGATTCAGGAGTAGCCATTGCAAAAGATATGGCAGATATTATCTTACTTGAGAAAGACCTGAACGTGCTTGTTGCGGGAGTGGAGCATGGTAGACTCACTTTTGGCAACACAATGAAGTATGTTAAGATGTCAGTGATTGCTAACTTGGGAAGTGTCATTTCACTCCTCATAGCAACACTGGTATTCAAGTATGAGCCCTTAACTTCTACACAGCTTCTGACACAGAATTTCATCTACAGTGTGGGACAGATTGCCATCGCCTGGGACAAGATGGATGAAGAGTATGTGAAGACACCTCACAAATCCTCAGAAAGAGGCTTGTCCATGTTCATACTGTGGAATGGATCAGTGTGCACTCTGTGTGATGTGGCAACACTCATGCTTCTTTGGTTTTATTACAAGGCTTACACTGATGTGACTCAGAAGTTTTTCCATTCAGCTTGGTTCATTGAAGGTCTTCTCTTGCAGACCCTCATCATCCACTTGATCAGGACTGAGAAAATCCCTTTCATGCAGGAGGTTGCATCTTGGCCTGTGATTTTCTCTACTGTTTTGACTTCTGCAATTGGAATTGCTCTTCCTTTCACACCCATTGGGAAGGTCATGGGATTCTCCCTTCTGCCCCTCTCATATTTCGGATTTTTGTTTATTCTTTTTCTTGGCTATTTTATAGTTGGCCATGTGGTTAAGAGACTTTACATATTGGTTTATAAGAGGTGGCTTTGA 1956 0.409 MSTMFSKVGKKKPPDDFEKGLRWIFYLIISVMLVVVTILFVVNYLTSLDLTQSVLFAISVASVLNPQMLPLIINTCLAKGALAMAKDRCIVKSLTSIRDMGSMDILCIDKTGSLTMNHAVMVNHLDYRGLPQENVLRYAFLNSYFKTDQKYPLDDAILAFVYSNGFRFRPSLWRKIEEIPFDFRRRRVSVILETEDRHSEFFGRFMVTKGALLEVLKVCSFIENFEQDEVSPFSFDDYQRILNLSEDISNEGLRILGVAIRKLEMPQTCETSNGSKREDEDIEKDMVFLGLITFFDPPKDTAKQALWRLCEKGVKAKVLTGDSLSLTTRVCREVGISTDHVITGPELELLDQDTFHETVKRATVLARLTPIQKLHVVQSLQTVGNHVVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIATLVFKYEPLTSTQLLTQNFIYSVGQIAIAWDKMDEEYVKTPHKSSERGLSMFILWNGSVCTLCDVATLMLLWFYYKAYTDVTQKFFHSAWFIEGLLLQTLIIHLIRTEKIPFMQEVASWPVIFSTVLTSAIGIALPFTPIGKVMGFSLLPLSYFGFLFILFLGYFIVGHVVKRLYILVYKRWL 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10749g00003 651 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 102 298 IPR023299 GO:0000166
Vium10749g00003 651 Gene3D - 26 603 - -
Vium10749g00003 651 Pfam haloacid dehalogenase-like hydrolase 105 405 - -
Vium10749g00003 651 SUPERFAMILY Calcium ATPase, transmembrane domain M 9 648 IPR023298 -
Vium10749g00003 651 PANTHER CATION TRANSPORTING ATPASE 24 641 - -
Vium10749g00003 651 NCBIfam HAD-IC family P-type ATPase 357 470 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium10749g00003 651 NCBIfam magnesium-translocating P-type ATPase 8 650 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00003 651 SUPERFAMILY HAD-like 282 439 IPR036412 -
Vium10749g00003 651 Pfam E1-E2 ATPase 13 86 - -
Vium10749g00003 651 Gene3D - 119 295 IPR023299 GO:0000166
Vium10749g00003 651 PRINTS Magnesium-transporting ATPase signature 449 464 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00003 651 PRINTS Magnesium-transporting ATPase signature 20 36 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00003 651 PRINTS Magnesium-transporting ATPase signature 499 512 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00003 651 PRINTS Magnesium-transporting ATPase signature 604 625 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00003 651 PRINTS Magnesium-transporting ATPase signature 37 56 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00003 651 PRINTS Magnesium-transporting ATPase signature 519 535 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00003 651 PRINTS Magnesium-transporting ATPase signature 141 154 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00003 651 PRINTS Magnesium-transporting ATPase signature 554 575 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00003 651 Gene3D - 104 428 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10749g00003 Vium-Chr10749 1401 5637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10749g00003 66 543 Primary Pumps ATPases(2) AT1G10130 26.212 3.61e-45 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10749g00003 K01531 - pvu:PHAVU_002G260400g 1200.27