Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10749g00002 ATGCTCGTGTTGGTTTTCATCAGTGTCACCCTCCGTTTCTATCAGGAATACAGCAGCTCAAAAGCAGCAATGAAGCTTTCAGAATTTGTAAAATGTCCAATAAAAGTTCAAAGATGCGCTGGTAGAGTTGTTCAGAAAGAACTTATTGTTCAAGTTGATCATAGGGATGTAGTTCCAGGAGACATTGTAATTTTTGAACCTGGAGACCTCTTTCCTGGAGATATCAGATTGTTATCTTCTAAACAACTTGTTGTAAGTCAGGCCTCACTAACTGGGGAATCTTGGACAACTGACAAAGCTTCTGATATCAGAGAAGACTACAATACTCCTTTATTGGATTTAAAAAACATCTGTTTCATGGGCACAAACGTGGTATCAGGTACTGGAACAGGCCTAGTGGTTTCAACTGGATCCAAGACTTACATGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAGCCACCAGATGATTTTGAAAAGGGTCTCAGATGGATATTTTACTTGATTATTTCTGTTATGCTAGTAGTTGTTACCATCCTGTTTGTGGTAAATTACTTGACATCTCTTGATTTGACCCAAAGTGTTCTTTTTGCCATCTCTGTTGCATCTGTTCTGAATCCTCAGATGCTTCCCCTCATCATTAACACATGCCTTGCAAAAGGAGCACTTGCTATGGCTAAAGACAGGTGTATAGTAAAGAGTTTAACATCTATACGCGATATGGGATCAATGGATATTCTTTGTATTGACAAGACAGGCTCCCTTACAATGAATCATGCAGTCATGGTTAATCATCTTGATTACAGGGGTTTACCCCAAGAAAACGTTTTACGCTATGCCTTCCTCAACTCTTACTTTAAGACTGATCAGAAGTATCCTCTGGATGATGCTATTCTTGCATTTGTATATTCAAATGGATTCAGGTTTCGGCCATCACTGTGGAGGAAGATAGAAGAGATTCCTTTTGACTTCAGAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGACAGACACTCAGAATTCTTTGGAAGGTTCATGGTAACAAAAGGAGCACTATTAGAAGTATTAAAAGTTTGTTCTTTCATTGAGAATTTCGAACAAGATGAAGTTTCCCCCTTCTCTTTCGATGATTATCAGCGTATTTTAAATCTTTCAGAAGATATTAGCAATGAAGGGTTAAGGATTCTAGGAGTAGCTATAAGGAAGCTGGAAATGCCGCAAACATGTGAAACAAGTAATGGAAGCAAGAGAGAAGACGAGGATATCGAAAAAGACATGGTGTTCCTTGGCCTCATAACATTTTTCGACCCACCTAAGGACACAGCAAAGCAAGCACTGTGGCGTTTGTGTGAGAAGGGAGTGAAAGCAAAGGTTTTAACTGGTGATTCCCTCTCCCTGACAACAAGGGTATGCAGAGAAGTTGGCATAAGCACCGATCATGTAATAACAGGTCCTGAACTAGAGCTACTTGACCAAGACACGTTCCATGAGACAGTTAAAAGAGCCACAGTACTAGCACGTCTTACTCCAATTCAGAAACTCCATGTGGTGCAATCCTTGCAAACAGTTGGAAACCATGTTGTTGGGTTCTTAGGAGATGGAGTGAATGATTCACTGGCTTTAGATGCTGCGAATGTAAGCATTTCTGTGGATTCAGGAGTAGCCATTGCAAAAGATATGGCAGATATTATCTTACTTGAGAAAGACCTGAACGTGCTTGTTGCGGGAGTGGAGCATGGTAGACTCACTTTTGGCAACACAATGAAGTATGTTAAGATGTCAGTGATTGCTAACTTGGGAAGTGTCATTTCACTCCTCATAGCAACACTGGTATTCAAGTATGAGCCCTTAACTTCTACACAGCTTCTGACACAGAATTTCATCTACAGTGTGGGACAGATTGCCATCGCCTGGGACAAGATGGATGAAGAGTATGTGAAGACACCTCACAAATCCTCAGAAAGAGGCTTGTCCATGTTCATACTGTGGAATGGATCAGTGTGCACTCTGTGTGATGTGGCAACACTCATGCTTCTTTGGTTTTATTACAAGGCTTACACTGATGTGACTCAGAAGTTTTTCCATTCAGCTTGGTTCATTGAAGGTCTTCTCTTGCAGACCCTCATCATCCACTTGATCAGGACTGAGAAAATCCCTTTCATGCAGGAGGTTGCATCTTGGCCTGTGATTTTCTCTACTGTTTTGACTTCTGCAATTGGAATTGCTCTTCCTTTCACACCCATTGGGAAGGTCATGGGATTCTCCCTTCTGCCCCTCTCATATTTCGGATTTTTGTTTATTCTTTTTCTTGGCTATTTTATAGTTGGCCATGTGGTTAAGAGACTTTACATATTGGTTTATAAGAGGTGGCTTTGA 2379 0.4069 MLVLVFISVTLRFYQEYSSSKAAMKLSEFVKCPIKVQRCAGRVVQKELIVQVDHRDVVPGDIVIFEPGDLFPGDIRLLSSKQLVVSQASLTGESWTTDKASDIREDYNTPLLDLKNICFMGTNVVSGTGTGLVVSTGSKTYMSTMFSKVGKKKPPDDFEKGLRWIFYLIISVMLVVVTILFVVNYLTSLDLTQSVLFAISVASVLNPQMLPLIINTCLAKGALAMAKDRCIVKSLTSIRDMGSMDILCIDKTGSLTMNHAVMVNHLDYRGLPQENVLRYAFLNSYFKTDQKYPLDDAILAFVYSNGFRFRPSLWRKIEEIPFDFRRRRVSVILETEDRHSEFFGRFMVTKGALLEVLKVCSFIENFEQDEVSPFSFDDYQRILNLSEDISNEGLRILGVAIRKLEMPQTCETSNGSKREDEDIEKDMVFLGLITFFDPPKDTAKQALWRLCEKGVKAKVLTGDSLSLTTRVCREVGISTDHVITGPELELLDQDTFHETVKRATVLARLTPIQKLHVVQSLQTVGNHVVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIATLVFKYEPLTSTQLLTQNFIYSVGQIAIAWDKMDEEYVKTPHKSSERGLSMFILWNGSVCTLCDVATLMLLWFYYKAYTDVTQKFFHSAWFIEGLLLQTLIIHLIRTEKIPFMQEVASWPVIFSTVLTSAIGIALPFTPIGKVMGFSLLPLSYFGFLFILFLGYFIVGHVVKRLYILVYKRWL 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10749g00002 792 NCBIfam magnesium-translocating P-type ATPase 1 791 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00002 792 PRINTS Magnesium-transporting ATPase signature 660 676 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00002 792 PRINTS Magnesium-transporting ATPase signature 282 295 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00002 792 PRINTS Magnesium-transporting ATPase signature 745 766 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00002 792 PRINTS Magnesium-transporting ATPase signature 178 197 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00002 792 PRINTS Magnesium-transporting ATPase signature 695 716 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00002 792 PRINTS Magnesium-transporting ATPase signature 161 177 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00002 792 PRINTS Magnesium-transporting ATPase signature 640 653 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00002 792 PRINTS Magnesium-transporting ATPase signature 590 605 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00002 792 NCBIfam HAD-IC family P-type ATPase 498 611 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium10749g00002 792 NCBIfam HAD-IC family P-type ATPase 2 294 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium10749g00002 792 Gene3D - 245 569 IPR023214 -
Vium10749g00002 792 Pfam haloacid dehalogenase-like hydrolase 383 546 - -
Vium10749g00002 792 SUPERFAMILY HAD-like 423 580 IPR036412 -
Vium10749g00002 792 Pfam E1-E2 ATPase 42 227 - -
Vium10749g00002 792 Gene3D - 32 136 - -
Vium10749g00002 792 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 789 IPR023298 -
Vium10749g00002 792 Gene3D - 2 744 - -
Vium10749g00002 792 SUPERFAMILY Calcium ATPase, transduction domain A 42 147 IPR008250 -
Vium10749g00002 792 Gene3D - 260 436 IPR023299 GO:0000166
Vium10749g00002 792 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 243 439 IPR023299 GO:0000166
Vium10749g00002 792 PANTHER CATION TRANSPORTING ATPASE 2 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10749g00002 Vium-Chr10749 1401 5901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10749g00002 56 684 Primary Pumps ATPases(2) AT1G10130 27.083 2.00e-61 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10749g00002 K01531 - pvu:PHAVU_002G260400g 1445.25