Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10749g00001 ATGCTCGTGTTGGTTTTCATCAGTGTCACCCTCCGTTTCTATCAGGAATACAGCAGCTCAAAAGCAGCAATGAAGCTTTCAGAATTTGTAAAATGTCCAATAAAAGTTCAAAGATGCGCTGGTAGAGTTGTTCAGAAAGAACTTATTGTTCAAGTTGATCATAGGGATGTAGTTCCAGGAGACATTGTAATTTTTGAACCTGGAGACCTCTTTCCTGGAGATATCAGATTGTTATCTTCTAAACAACTTGTTGTAAGTCAGGCCTCACTAACTGGGGAATCTTGGACAACTGACAAAGCTTCTGATATCAGAGAAGACTACAATACTCCTTTATTGGATTTAAAAAACATCTGTTTCATGGGCACAAACGTGGTATCAGGTACTGGAACAGGCCTAGTGGTTTCAACTGGATCCAAGACTTACATGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAGCCACCAGATGATTTTGAAAAGGGTCTCAGATGGATATTTTACTTGATTATTTCTGTTATGCTAGTAGTTGTTACCATCCTGTTTGTGATGCTTCCCCTCATCATTAACACATGCCTTGCAAAAGGAGCACTTGCTATGGCTAAAGACAGGTGTATAGTAAAGAGTTTAACATCTATACGCGATATGGGATCAATGGATATTCTTTGTATTGACAAGACAGGCTCCCTTACAATGAATCATGCAGTCATGGTTAATCATCTTGATTACAGGGGTTTACCCCAAGAAAACGTTTTACGCTATGCCTTCCTCAACTCTTACTTTAAGACTGATCAGAAGTATCCTCTGGATGATGCTATTCTTGCATTTGTATATTCAAATGGATTCAGGTTTCGGCCATCACTGTGGAGGAAGATAGAAGAGATTCCTTTTGACTTCAGAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGACAGACACTCAGAATTCTTTGGAAGGTTCATGGTAACAAAAGGAGCACTATTAGAAGTATTAAAAGTTTGTTCTTTCATTGAGAATTTCGAACAAGATGAAGTTTCCCCCTTCTCTTTCGATGATTATCAGCGTATTTTAAATCTTTCAGAAGATATTAGCAATGAAGGGTTAAGGATTCTAGGAGTAGCTATAAGGAAGCTGGAAATGCCGCAAACATGTGAAACAAGTAATGGAAGCAAGAGAGAAGACGAGGATATCGAAAAAGACATGGTGTTCCTTGGCCTCATAACATTTTTCGACCCACCTAAGGACACAGCAAAGCAAGCACTGTGGCGTTTGTGTGAGAAGGGAGTGAAAGCAAAGGTTTTAACTGGTGATTCCCTCTCCCTGACAACAAGGGTATGCAGAGAAGTTGGCATAAGCACCGATCATGTAATAACAGGTCCTGAACTAGAGCTACTTGACCAAGACACGTTCCATGAGACAGTTAAAAGAGCCACAGTACTAGCACGTCTTACTCCAATTCAGAAACTCCATGTGGTGCAATCCTTGCAAACAGTTGGAAACCATGTTGTTGGGTTCTTAGGAGATGGAGTGAATGATTCACTGGCTTTAGATGCTGCGAATGTAAGCATTTCTGTGGATTCAGGAGTAGCCATTGCAAAAGATATGGCAGATATTATCTTACTTGAGAAAGACCTGAACGTGCTTGTTGCGGGAGTGGAGCATGGTAGACTCACTTTTGGCAACACAATGAAGTATGTTAAGATGTCAGTGATTGCTAACTTGGGAAGTGTCATTTCACTCCTCATAGCAACACTGGTATTCAAGTATGAGCCCTTAACTTCTACACAGCTTCTGACACAGAATTTCATCTACAGTGTGGGACAGATTGCCATCGCCTGGGACAAGATGGATGAAGAGTATGTGAAGACACCTCACAAATCCTCAGAAAGAGGCTTGTCCATGTTCATACTGTGGAATGGATCAGTGTGCACTCTGTGTGATGTGGCAACACTCATGCTTCTTTGGTTTTATTACAAGGCTTACACTGATGTGACTCAGAAGTTTTTCCATTCAGCTTGGTTCATTGAAGGTCTTCTCTTGCAGACCCTCATCATCCACTTGATCAGGACTGAGAAAATCCCTTTCATGCAGGAGGTTGCATCTTGGCCTGTGATTTTCTCTACTGTTTTGACTTCTGCAATTGGAATTGCTCTTCCTTTCACACCCATTGGGAAGGTCATGGGATTCTCCCTTCTGCCCCTCTCATATTTCGGATTTTTGTTTATTCTTTTTCTTGGCTATTTTATAGTTGGCCATGTGGTTAAGAGACTTTACATATTGGTTTATAAGAGGTGGCTTTGA 2301 0.4076 MLVLVFISVTLRFYQEYSSSKAAMKLSEFVKCPIKVQRCAGRVVQKELIVQVDHRDVVPGDIVIFEPGDLFPGDIRLLSSKQLVVSQASLTGESWTTDKASDIREDYNTPLLDLKNICFMGTNVVSGTGTGLVVSTGSKTYMSTMFSKVGKKKPPDDFEKGLRWIFYLIISVMLVVVTILFVMLPLIINTCLAKGALAMAKDRCIVKSLTSIRDMGSMDILCIDKTGSLTMNHAVMVNHLDYRGLPQENVLRYAFLNSYFKTDQKYPLDDAILAFVYSNGFRFRPSLWRKIEEIPFDFRRRRVSVILETEDRHSEFFGRFMVTKGALLEVLKVCSFIENFEQDEVSPFSFDDYQRILNLSEDISNEGLRILGVAIRKLEMPQTCETSNGSKREDEDIEKDMVFLGLITFFDPPKDTAKQALWRLCEKGVKAKVLTGDSLSLTTRVCREVGISTDHVITGPELELLDQDTFHETVKRATVLARLTPIQKLHVVQSLQTVGNHVVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIATLVFKYEPLTSTQLLTQNFIYSVGQIAIAWDKMDEEYVKTPHKSSERGLSMFILWNGSVCTLCDVATLMLLWFYYKAYTDVTQKFFHSAWFIEGLLLQTLIIHLIRTEKIPFMQEVASWPVIFSTVLTSAIGIALPFTPIGKVMGFSLLPLSYFGFLFILFLGYFIVGHVVKRLYILVYKRWL 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10749g00001 766 Gene3D - 2 718 - -
Vium10749g00001 766 Pfam haloacid dehalogenase-like hydrolase 357 520 - -
Vium10749g00001 766 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 217 413 IPR023299 GO:0000166
Vium10749g00001 766 Gene3D - 234 410 IPR023299 GO:0000166
Vium10749g00001 766 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 763 IPR023298 -
Vium10749g00001 766 NCBIfam HAD-IC family P-type ATPase 472 585 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium10749g00001 766 NCBIfam magnesium-translocating P-type ATPase 183 765 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00001 766 Pfam E1-E2 ATPase 42 191 - -
Vium10749g00001 766 SUPERFAMILY HAD-like 397 554 IPR036412 -
Vium10749g00001 766 PANTHER CATION TRANSPORTING ATPASE 2 182 - -
Vium10749g00001 766 SUPERFAMILY Calcium ATPase, transduction domain A 42 147 IPR008250 -
Vium10749g00001 766 PRINTS Magnesium-transporting ATPase signature 161 177 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00001 766 PRINTS Magnesium-transporting ATPase signature 669 690 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00001 766 PRINTS Magnesium-transporting ATPase signature 719 740 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00001 766 PRINTS Magnesium-transporting ATPase signature 614 627 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00001 766 PRINTS Magnesium-transporting ATPase signature 634 650 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00001 766 PRINTS Magnesium-transporting ATPase signature 564 579 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vium10749g00001 766 Gene3D - 32 136 - -
Vium10749g00001 766 Gene3D - 219 543 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10749g00001 Vium-Chr10749 1401 5901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10749g00001 56 658 Primary Pumps ATPases(2) AT1G10130 26.806 2.05e-57 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10749g00001 K01531 - pvu:PHAVU_002G260400g 1392.87