Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10715g00003 ATGGACAGGTCAACTGGCCGCAGTGGTGGTGGAAGTGTGGACATGTTTCTACCAAATTATAAGTTGGGGAAAACACTTGGCATTGGATCCTTTGGTAAGGTGAAAATTGCCGAACACGTACTGACTGGTCATAAAGTCGCTATAAAGATCCTTAACCGCCACAAGATAAGAAACATGGAAATGGAAGAAAAAGTTAGAAGGGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATACGACTTTACGAGGTCATAGAAACCCCAACAGACATATTTGTTGTTATGGAGTACGTGAAATCTGGAGAGCTCTTTGATTACATAGTGGAGAAGGGTAGGTTGCAAGAGGATGAAGCCCGCCATTTTTTTCAGCAGATAATTTCTGGTGTGGAGTACTGTCACAGGAATATGGTTGTTCATAGAGACTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATTTAATATCAAGATTGCTGATTTTGGCTTGAGCAATATCATGCGTGATGGTCACTTCCTTAAGACAAGTTGTGGAAGCCCTAACTATGCGGCTCCAGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTGTATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTTTTCAAAAAGATAAAGGGTGGGATATATACTCTTCCTAGTCATCTTTCACCTGGTGCTAGAGATTTGATACCAAGGATGCTTGTGGTGGATCCCATGAAGAGGATGACCATACCTGAGATACGTCATCACCCATGGTTCCAAGTTCGTCTGCCACGCTATTTAGCAGTGCCACCACCAGATACACTGCAACAAGCCAAAAAGGATTCTGGTTTCAATCGGATACATTCCAGTGAAGTTCCTTCTCCAGTTGTTGGACACCAAAGCACAGGGTATATGGATTACCAGGGAGTAGGAATGCGGCAACAGTTCCCTGCTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCACAACCACGTGAAATAATGACCGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTAGCATTCCCAGTCATCATGAAGGAATGATTAACAATTCTGTGCATAGTAATCATTACTTTGGAAATGATTCCAGCATTGTTGAAGATGAGGCTGTTTCTAAGTCAAATGTGGTCAAGTTTGAAGTGCAGCTTTACAAAGCTCGTGAGGAGAAGTATCTACTTGATCTTCAGAGGGTCCAGGGCCCACAGTTTCTTTTCTTGGATCTCTGTGCTGCTTTCCTTTCACAGCTTCGTGTTCTCTAG 1374 0.4243 MDRSTGRSGGGSVDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRHKIRNMEMEEKVRREIKILRLFMHHHIIRLYEVIETPTDIFVVMEYVKSGELFDYIVEKGRLQEDEARHFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKFNIKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRHHPWFQVRLPRYLAVPPPDTLQQAKKDSGFNRIHSSEVPSPVVGHQSTGYMDYQGVGMRQQFPAERKWALGLQSRAQPREIMTEVLKALQELNVCWKKIGHYNMKCRWVASIPSHHEGMINNSVHSNHYFGNDSSIVEDEAVSKSNVVKFEVQLYKAREEKYLLDLQRVQGPQFLFLDLCAAFLSQLRVL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10715g00003 457 SUPERFAMILY KA1-like 314 456 IPR028375 -
Vium10715g00003 457 SMART serkin_6 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10715g00003 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Vium10715g00003 457 Pfam Protein kinase domain 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10715g00003 457 FunFam Non-specific serine/threonine protein kinase 338 455 - -
Vium10715g00003 457 Pfam Kinase associated domain 1 414 456 IPR001772 -
Vium10715g00003 457 FunFam Non-specific serine/threonine protein kinase 9 101 - -
Vium10715g00003 457 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 408 456 IPR001772 -
Vium10715g00003 457 CDD AMPKA_C 332 454 - -
Vium10715g00003 457 FunFam Non-specific serine/threonine protein kinase 12 308 - -
Vium10715g00003 457 ProSiteProfiles Protein kinase domain profile. 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10715g00003 457 CDD STKc_AMPK_alpha 17 272 - -
Vium10715g00003 457 Gene3D Kinase associated domain 1, KA1 338 455 - -
Vium10715g00003 457 Gene3D Transferase(Phosphotransferase) domain 1 12 307 - -
Vium10715g00003 457 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vium10715g00003 457 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 18 294 - -
Vium10715g00003 457 SUPERFAMILY Protein kinase-like (PK-like) 17 306 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10715g00003 Vium-Chr10715 12916 21629 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10715g00003 20 273 CBL-interacting serine-threonine protein kinases AT2G26980 52.529 8.78e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Vium10715g00003 Pkinase 3.9e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10715g00003 K07198 - gmx:547544 858.981