Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10715g00002 ATGGACAGGTCAACTGGCCGCAGTGGTGGTGGAAGTGTGGACATGTTTCTACCAAATTATAAGTTGGGGAAAACACTTGGCATTGGATCCTTTGGTAAGGTGAAAATTGCCGAACACGTACTGACTGGTCATAAAGTCGCTATAAAGATCCTTAACCGCCACAAGATAAGAAACATGGAAATGGAAGAAAAAGTTAGAAGGGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATACGACTTTACGAGGTCATAGAAACCCCAACAGACATATTTGTTGTTATGGAGTACGTGAAATCTGGAGAGCTCTTTGATTACATAGTGGAGAAGGGTAGGTTGCAAGAGGATGAAGCCCGCCATTTTTTTCAGCAGATAATTTCTGGTGTGGAGTACTGTCACAGGAATATGGTTGTTCATAGAGACTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATTTAATATCAAGATTGCTGATTTTGGCTTGAGCAATATCATGCGTGATGGTCACTTCCTTAAGACAAGTTGTGGAAGCCCTAACTATGCGGCTCCAGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTGTATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTTTTCAAAAAGATAAAGGGTGGGATATATACTCTTCCTAGTCATCTTTCACCTGGTGCTAGAGATTTGATACCAAGGATGCTTGTGGTGGATCCCATGAAGAGGATGACCATACCTGAGATACGTCATCACCCATGGTTCCAAGTTCGTCTGCCACGCTATTTAGCAGTGCCACCACCAGATACACTGCAACAAGCCAAAAAGATTGACGAGGAGATTCTTCAAGAAGTGGTTAATATGGGATTTGAAAGGAATCAATTGGTTGAATCTCTTGCAAACAGAATACAAAATAAGGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTCCGTGTATCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGGATTCTGGTTTCAATCGGATACATTCCAGTGAAGTTCCTTCTCCAGTTGTTGGACACCAAAGCACAGGGTATATGGATTACCAGGGAGTAGGAATGCGGCAACAGTTCCCTGCTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCACAACCACGTGAAATAATGACCGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTAGCATTCCCAGTCATCATGAAGGAATGATTAACAATTCTGTGCATAGTAATCATTACTTTGGAAATGATTCCAGCATTGTTGAAGATGAGGCTGTTTCTAAGTCAAATGTGGTCAAGTTTGAAGTGCAGCTTTACAAAGCTCGTGAGGAGAAGTATCTACTTGATCTTCAGAGGGTCCAGGGCCCACAGTTTCTTTTCTTGGATCTCTGTGCTGCTTTCCTTTCACAGCTTCGTGTTCTCTAG 1548 0.4173 MDRSTGRSGGGSVDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRHKIRNMEMEEKVRREIKILRLFMHHHIIRLYEVIETPTDIFVVMEYVKSGELFDYIVEKGRLQEDEARHFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKFNIKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRHHPWFQVRLPRYLAVPPPDTLQQAKKIDEEILQEVVNMGFERNQLVESLANRIQNKGTVTYYLLLDNRFRVSSGYLGAEFQETMDSGFNRIHSSEVPSPVVGHQSTGYMDYQGVGMRQQFPAERKWALGLQSRAQPREIMTEVLKALQELNVCWKKIGHYNMKCRWVASIPSHHEGMINNSVHSNHYFGNDSSIVEDEAVSKSNVVKFEVQLYKAREEKYLLDLQRVQGPQFLFLDLCAAFLSQLRVL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10715g00002 515 SUPERFAMILY Protein kinase-like (PK-like) 17 273 IPR011009 -
Vium10715g00002 515 SMART serkin_6 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10715g00002 515 FunFam Non-specific serine/threonine protein kinase 396 513 - -
Vium10715g00002 515 Pfam Protein kinase domain 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10715g00002 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Vium10715g00002 515 Gene3D Transferase(Phosphotransferase) domain 1 12 351 - -
Vium10715g00002 515 FunFam Non-specific serine/threonine protein kinase 11 350 - -
Vium10715g00002 515 Pfam Kinase associated domain 1 472 514 IPR001772 -
Vium10715g00002 515 SUPERFAMILY KA1-like 329 514 IPR028375 -
Vium10715g00002 515 CDD AMPKA_C 390 512 - -
Vium10715g00002 515 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 293 333 IPR015940 -
Vium10715g00002 515 FunFam Non-specific serine/threonine protein kinase 9 101 - -
Vium10715g00002 515 CDD UBA_SnRK1_plant 294 334 - -
Vium10715g00002 515 Pfam UBA/TS-N domain 294 330 IPR015940 -
Vium10715g00002 515 ProSiteProfiles Protein kinase domain profile. 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10715g00002 515 CDD STKc_AMPK_alpha 17 272 - -
Vium10715g00002 515 SMART uba_6 295 332 IPR015940 -
Vium10715g00002 515 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vium10715g00002 515 PANTHER SERINE/THREONINE KINASE 19 337 - -
Vium10715g00002 515 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 466 514 IPR001772 -
Vium10715g00002 515 Gene3D Kinase associated domain 1, KA1 396 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10715g00002 Vium-Chr10715 12916 24089 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10715g00002 20 273 CBL-interacting serine-threonine protein kinases AT2G26980 52.529 3.72e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Vium10715g00002 Pkinase 5.3e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10715g00002 K07198 - gmx:547544 1003.43