Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10697g00002 ATGGAGGAAGATGAAATGGTTTGGTGTTCCTCTGATTCTTGTTCTTCTGATTCGGGAGAGGAAGACATCGAAGAACGGAAATCGCAAAACGTGGATGCACTAGTAAGGGGTAATCTTGTCGTGAAGAGACAGTCGCTGCTACCGCGGCTTCTTTCAGTATCGCAAGGGGCGGCCGTATGTAGAAAACCCTTTAAACCTCCATCCTCCAGAACTCATGCTTCCACTTACAATCAAGACCTCACTCGGAGGCTTTCCGCTCGCAAAAGGTTTGTTCCCTGGGGTTCTTCCTCTCCTATTCCTAGACCTGCGATCTCCGACTTCCAATTCAACCTATCGGTAACTGATGTTGATGTTCCTGTTTCTGAGGAGCCGAAACCATCTCTGCCCCCGGGGATCGACCCTTTAGTACTGTGGCACCCTCAAGACTCCCACGATGACCCCTCTAATACTAATTTTACCACCATTACAGTTGACCCTTTGCTTGTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTGATTGTGTCTCTGGTCTGTGTACCACACCAAATATACATGGATGCATTTTGGCAGATGATATGGGTCTGGGGAAGACATTGCAGTCCATCACATTACTATATACTCTACTTTGTCAAGGGTTTGATGGCAAACCATTGGTTCAAAAATCTATCATAGTGACTCCTACCAGCCTTGTCAGTAATTGGGAAGCTGAAATAAAAAAGTGGGTTGGTGAAAGAGTTCGTCTTGTCGCTCTATGTGAGAGTTCAAGAGAAGATGTTGTCTCTGCGATTGACAGTTTTACAAATACCGAAAGAAATTTACAGGTTCTCATTATTTCATATGAGACATTCCGAATGCATTCTTCAAAGTTTAGCTCTAGTGACTCATGTGACCTTCTCATATGTGATGAGGCTCACAGATTGAAAAATGATCAAACGATAACAAACCGGGCATTGGCAGCTCTTCCCTGCAAACGAAGAATTTTATTGTCAGGAACTCCCTTACAAAATGATTTAGAAGAATTCTTTGCAATGGTTAACTTTACCAATCCTGGAATATTGGGCAGTATTGCACATTTTCGACGTTACTATGAGGCACCAATTATTTGTGGAAGAGAACCTGCTGCCACTGTTGAAGAGAAGAAGATAGGTGCAGAACGCTCTGCTGAATTAAGTGTCAATGTTAATAGGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCACTTGCCACCTAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAGTCAGACCTATATAAACATTTTATACAATCGAAAAATGTGAAGAGGGCAATTACTGAAGAACTAAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTCAAAAAATTGTGCAATCATCCAAAGCTTATCTATGATACCATACGAAGTGGCAGCCCAGGAACTTCGGGTTTTGAGGAGTGTATCCGATTCTTCCCACCTGAAATGTTATCTGGAAGGTCTGGCTCGTGGACCGGAGGACATGGAGCATGGGTTGAACTATCCGGGAAAATGCATGTCTTGGCAAGATTACTTGCTCATTTACGTCACTGA 1602 0.4282 MEEDEMVWCSSDSCSSDSGEEDIEERKSQNVDALVRGNLVVKRQSLLPRLLSVSQGAAVCRKPFKPPSSRTHASTYNQDLTRRLSARKRFVPWGSSSPIPRPAISDFQFNLSVTDVDVPVSEEPKPSLPPGIDPLVLWHPQDSHDDPSNTNFTTITVDPLLVRYLRPHQREGVQFMFDCVSGLCTTPNIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPLVQKSIIVTPTSLVSNWEAEIKKWVGERVRLVALCESSREDVVSAIDSFTNTERNLQVLIISYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGSIAHFRRYYEAPIICGREPAATVEEKKIGAERSAELSVNVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEECIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAHLRH 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10697g00002 533 FunFam DNA repair and recombination protein RAD54 134 405 - -
Vium10697g00002 533 Pfam SNF2-related domain 168 474 IPR000330 GO:0005524|GO:0140658
Vium10697g00002 533 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 356 IPR014001 -
Vium10697g00002 533 Gene3D - 428 502 - -
Vium10697g00002 533 MobiDBLite consensus disorder prediction 1 26 - -
Vium10697g00002 533 SMART ultradead3 161 364 IPR014001 -
Vium10697g00002 533 PANTHER SNF2/RAD54 FAMILY MEMBER 51 532 - -
Vium10697g00002 533 Gene3D - 138 405 IPR038718 -
Vium10697g00002 533 Gene3D - 406 532 IPR027417 -
Vium10697g00002 533 FunFam Predicted protein 428 502 - -
Vium10697g00002 533 CDD DEXHc_RAD54 165 406 - -
Vium10697g00002 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 406 IPR027417 -
Vium10697g00002 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 532 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10697g00002 Vium-Chr10697 618 14497 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10697g00002 191 474 RAD5 or RAD16-like Gene Family AT5G22750 27.273 2.02e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium10697g00002 SNF2_N 1.1e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10697g00002 K10875 - gmx:100781631 914.45