Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10685g00006 ATGAGATTACAATCACTCGGGCACTTGCTGGAGCCAATTCTTGAGCCATTGGTTCGTAAAGTGGTTAAGGAAGAAGTTGAAGCAGCCCTAAAGAGACATTTAACCTGCATGAAACAGACCTGTGGAAAGGAATTGCATACTACTGAATTAAGAAATTTGCAGCTGCAGTTTGAAAACAGCATTTCTCTGCCTGTCTTTACTGGAGGTCGGATTGAAGGAGAAGATGGTTCTAACCTAAGAATAAGTTTAGTTGATGGCCTAACTGGAGAGGTTGTCTGTACAGGACCGGAATCGATGGCTAAGGTGGAAATTGTAGTTCTTGAGGGTGATTTTGAAGAAGAAAGTGATATTTGGATGCCCGAAGAGTTCAAGAGCAATATTGTGAGAGAGAGGGAAGGAAAAAAGCCCCTTCTTACAGGAGATGTAATTTTATATCTTAAAGATGGTGTTGGTATGGTGGGTGAAATTTCGTATACAGATAATTCAAGCTGGACAAGGAGCCGCAGGTTCAGGCTTGGGGCAAGAGTTGTGGACAACTTTGATGGTGTTAGAATAAGAGAAGCAAAGACAGAATCATTTATTGTCAGAGATCACAGGGGAGAATTGTATAAGAAGCACCATCCTCCTAGTATGTCTGATGAAGTTTGGAGATTGGAAAAGATAGGCAAGGATGGAGCTTTCCACAAACGTTTGAGTCGGGAAAAGATCCTTACTGTTAGAGAGTTTCTCACGCTTCTCAATCTGGATCCAGCAAAGCTGCGCAGTATACTGGGCACTGGGATGTCTGCAAAGATGTGGGAAGTAACTGTGGAGCATGCTCGAACTTGTGTACTTGATACAACTAGGCACGTGTACTTCCCTTCTAATTCTCAACAACATGGTGTGGTCTTCAATGCTGTGGGACAAGTCACTGGACTGCTTTCTGAATGCGAGTATGTCACAGTAGATAAGCTGTCTGAAATTGAAAAGGTTGAGGCTCAAAGCACAGTTTCTAATGCATTGAGACAAAGGGAGAAATATACAACTTTTGAAGATGAAGATTCTCTCATGGATGGTTCTTCACACTTAACAAATGTACTTCACTCCCCAAGCTCTCCCAAGACTGAGGGATCAAGTGCCAACAAGCTTTTGGGTCCCCAAAAGACTGGAGGATTCAATTACCCCCAAACAAATGCCTCTTCTCCGGATATCATGTCATCCATTTATTCTGTTGGTGGAACCAGTAGCTTGGATGACTATTGCTTGCCTAGTTTCGACAACATGGGCCTCAGTTTTCCAGTCCAAGTCTCGAACTCTTTGATCTGTGACACTGATTCAATGGCTCATGCCTTTAGTGAGGAAGATCATCTGCAATTTTTTGATACTGATCTTCAATCTCACGTTGAGGCAGATTTACAGAGTGCTGTTGATAGCTTCATGCTCGCACGTTCTACGGCCAATGGTGGTGCGCAGAGGAGATGGAGAAAGGTATGCAACGTCCTAAAGTGGTTCATGGTTAGGAAACGAGGAAACCAAATACAGGTAAGGTTGTGA 1533 0.4318 MRLQSLGHLLEPILEPLVRKVVKEEVEAALKRHLTCMKQTCGKELHTTELRNLQLQFENSISLPVFTGGRIEGEDGSNLRISLVDGLTGEVVCTGPESMAKVEIVVLEGDFEEESDIWMPEEFKSNIVREREGKKPLLTGDVILYLKDGVGMVGEISYTDNSSWTRSRRFRLGARVVDNFDGVRIREAKTESFIVRDHRGELYKKHHPPSMSDEVWRLEKIGKDGAFHKRLSREKILTVREFLTLLNLDPAKLRSILGTGMSAKMWEVTVEHARTCVLDTTRHVYFPSNSQQHGVVFNAVGQVTGLLSECEYVTVDKLSEIEKVEAQSTVSNALRQREKYTTFEDEDSLMDGSSHLTNVLHSPSSPKTEGSSANKLLGPQKTGGFNYPQTNASSPDIMSSIYSVGGTSSLDDYCLPSFDNMGLSFPVQVSNSLICDTDSMAHAFSEEDHLQFFDTDLQSHVEADLQSAVDSFMLARSTANGGAQRRWRKVCNVLKWFMVRKRGNQIQVRL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10685g00006 510 Pfam Calmodulin binding protein C-terminal domain 283 341 IPR046829 -
Vium10685g00006 510 MobiDBLite consensus disorder prediction 352 390 - -
Vium10685g00006 510 Pfam Calmodulin binding protein central domain 211 276 IPR046830 -
Vium10685g00006 510 Pfam Calmodulin binding protein-like N-terminal domain 53 198 IPR046831 -
Vium10685g00006 510 MobiDBLite consensus disorder prediction 345 390 - -
Vium10685g00006 510 PANTHER OS02G0177800 PROTEIN 5 415 IPR012416 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10685g00006 Vium-Chr10685 28386 33463 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10685g00006 1 323 Calmodulin-binding Proteins AT5G62570 62.654 5.55e-149 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10685g00006 - - gmx:100793156 921.383