Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10685g00004 ATGTCGCTCAAGCGCCGCCCCGATGATGGCAAGACTCCAGACGACAAGCGGCGAAAGCCGCCTCCTTTCTCCAGTGTGGTGCGTGACGTGATGAGATTACAATCACTCGGGCACTTGCTGGAGCCAATTCTTGAGCCATTGGTTCGTAAAGTGGTTAAGGAAGAAGTTGAAGCAGCCCTAAAGAGACATTTAACCTGCATGAAACAGACCTGTGGAAAGGAATTGCATACTACTGAATTAAGAAATTTGCAGCTGCAGTTTGAAAACAGCATTTCTCTGCCTGTCTTTACTGGAGGACCGGAATCGATGGCTAAGGTGGAAATTGTAGTTCTTGAGGGTGATTTTGAAGAAGAAAGTGATATTTGGATGCCCGAAGAGTTCAAGAGCAATATTGTGAGAGAGAGGGAAGGAAAAAAGCCCCTTCTTACAGGAGATGTAATTTTATATCTTAAAGATGGTGTTGGTATGGTGGGTGAAATTTCGTATACAGATAATTCAAGCTGGACAAGGAGCCGCAGGTTCAGGCTTGGGGCAAGAGTTGTGGACAACTTTGATGGTGTTAGAATAAGAGAAGCAAAGACAGAATCATTTATTGTCAGAGATCACAGGGGAGAATTGTATAAGAAGCACCATCCTCCTAGTATGTCTGATGAAGTTTGGAGATTGGAAAAGATAGGCAAGGATGGAGCTTTCCACAAACGTTTGAGTCGGGAAAAGATCCTTACTGTTAGAGAGTTTCTCACGCTTCTCAATCTGGATCCAGCAAAGCTGCGCAGTATACTGGGCACTGGGATGTCTGCAAAGATGTGGGAAGTAACTGTGGAGCATGCTCGAACTTGTGTACTTGATACAACTAGGCACGTGTACTTCCCTTCTAATTCTCAACAACATGGTGTGGTCTTCAATGCTGTGGGACAAGTCACTGGACTGCTTTCTGAATGCGAGTATGTCACAGTAGATAAGCTGTCTGAAATTGAAAAGGTTGAGGCTCAAAGCACAGTTTCTAATGCATTGAGACAAAGGGAGAAATATACAACTTTTGAAGATGAAGATTCTCTCATGGATGGTTCTTCACACTTAACAAATGTACTTCACTCCCCAAGCTCTCCCAAGACTGAGGGATCAAGTGCCAACAAGCTTTTGGGTCCCCAAAAGACTGGAGGATTCAATTACCCCCAAACAAATGCCTCTTCTCCGGATATCATGTCATCCATTTATTCTGTTGGTGGAACCAGTAGCTTGGATGACTATTGCTTGCCTAGTTTCGACAACATGGGCCTCAGTTTTCCAGTCCAAGTCTCGAACTCTTTGATCTGTGACACTGATTCAATGGCTCATGCCTTTAGTGAGGAAGATCATCTGCAATTTTTTGATACTGATCTTCAATCTCACGTTGAGGCAGATTTACAGAGTGCTGTTGATAGCTTCATGCTCGCACGTTCTACGGCCAATGGTGGTGCGCAGAGGAGATGGAGAAAGGTATGCAACGTCCTAAAGTGGTTCATGGTTAGGAAACGAGGAAACCAAATACAGGTAAGGTTGTGA 1545 0.4434 MSLKRRPDDGKTPDDKRRKPPPFSSVVRDVMRLQSLGHLLEPILEPLVRKVVKEEVEAALKRHLTCMKQTCGKELHTTELRNLQLQFENSISLPVFTGGPESMAKVEIVVLEGDFEEESDIWMPEEFKSNIVREREGKKPLLTGDVILYLKDGVGMVGEISYTDNSSWTRSRRFRLGARVVDNFDGVRIREAKTESFIVRDHRGELYKKHHPPSMSDEVWRLEKIGKDGAFHKRLSREKILTVREFLTLLNLDPAKLRSILGTGMSAKMWEVTVEHARTCVLDTTRHVYFPSNSQQHGVVFNAVGQVTGLLSECEYVTVDKLSEIEKVEAQSTVSNALRQREKYTTFEDEDSLMDGSSHLTNVLHSPSSPKTEGSSANKLLGPQKTGGFNYPQTNASSPDIMSSIYSVGGTSSLDDYCLPSFDNMGLSFPVQVSNSLICDTDSMAHAFSEEDHLQFFDTDLQSHVEADLQSAVDSFMLARSTANGGAQRRWRKVCNVLKWFMVRKRGNQIQVRL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10685g00004 514 Pfam Calmodulin binding protein-like N-terminal domain 92 202 IPR046831 -
Vium10685g00004 514 MobiDBLite consensus disorder prediction 356 394 - -
Vium10685g00004 514 Pfam Calmodulin binding protein C-terminal domain 287 345 IPR046829 -
Vium10685g00004 514 MobiDBLite consensus disorder prediction 1 23 - -
Vium10685g00004 514 PANTHER OS02G0177800 PROTEIN 98 419 IPR012416 GO:0005516
Vium10685g00004 514 MobiDBLite consensus disorder prediction 349 394 - -
Vium10685g00004 514 Pfam Calmodulin binding protein central domain 215 280 IPR046830 -
Vium10685g00004 514 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10685g00004 Vium-Chr10685 28386 33463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10685g00004 1 327 Calmodulin-binding Proteins AT5G62570 57.778 1.79e-140 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10685g00004 - - gmx:100793156 903.279