Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10685g00003 ATGGCATCATTTGCAGGCACCACCCAGAAGTGCACAGCTTGTGAAAAGAAAGTGTATTGGGTGGAACAGCTTACTGCTGACAACAAGGTGTACCATAAATCGTGTTTCAGATGCCACCACTGCAAGGGCACCCTCAAGGTGAGACCAAACACAGGATCATTTCTGATCGTATCTGAATTCATGCTTGAAGGTATTCCAAGAATTGCTAGAGTCGAAAGATCTGCTGATCAGGTCCAAAACAACAAGGTTTCAAGATTGTTTTCTGGAACTCAGGAAAAGTGTGTTGTTTGCAAGAAAACGGTGTACCCAATTGAAAAGGTGGCTGTCGATGGGAAATCTTACCACAAGTCATGTTTCAGATGCACCCATGGTGGTTGTGTAATTAGCCCTTCAAATTATGTTGCCCATGAACATCTTCTCTATTGCAGACATCACCATACTCAGCTCTTCAAGCAAAAGGGTAACTTCAGTCAATTAGTGAAGCATGAAAATCTTCAACTCACCACTCAAAACACCACACAACATCCAACTAATGGCACTGCAACTTCACCTCATGACTCTTCTTAG 567 0.4286 MASFAGTTQKCTACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKVRPNTGSFLIVSEFMLEGIPRIARVERSADQVQNNKVSRLFSGTQEKCVVCKKTVYPIEKVAVDGKSYHKSCFRCTHGGCVISPSNYVAHEHLLYCRHHHTQLFKQKGNFSQLVKHENLQLTTQNTTQHPTNGTATSPHDSS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10685g00003 188 ProSiteProfiles LIM domain profile. 9 74 IPR001781 -
Vium10685g00003 188 Gene3D Cysteine Rich Protein 88 158 - -
Vium10685g00003 188 MobiDBLite consensus disorder prediction 168 188 - -
Vium10685g00003 188 PANTHER OS06G0237300 PROTEIN 2 47 - -
Vium10685g00003 188 ProSiteProfiles LIM domain profile. 92 152 IPR001781 -
Vium10685g00003 188 Pfam LIM domain 94 149 IPR001781 -
Vium10685g00003 188 Pfam LIM domain 11 47 IPR001781 -
Vium10685g00003 188 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Vium10685g00003 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Vium10685g00003 188 SMART lim_4 10 62 IPR001781 -
Vium10685g00003 188 SMART lim_4 93 145 IPR001781 -
Vium10685g00003 188 FunFam LIM domain and actin-binding 1 88 158 - -
Vium10685g00003 188 CDD LIM2_SF3 94 154 - -
Vium10685g00003 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 120 159 - -
Vium10685g00003 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 86 119 - -
Vium10685g00003 188 Gene3D Cysteine Rich Protein 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10685g00003 Vium-Chr10685 17793 26158 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vium10685g00003 LIM 3.3e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10685g00003 K09377 - gmx:100805084 303.138