Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10678g00010 ATGGAAGCCGCAGTCGTCGACCCCGGTTCCAGCCTTCTCAAAGCTGGTTTTGCAATTCCCGATCAAACTCCGGCCATGATAATTCCCACTCAGATGAAGCGAATGCTCGATGATGGGTCAGTGACCGATAACCCAACAGTCGACGACGTTTCCGTCGATCCGGTTTACCGAGGTTATGTCAGAGATTGGGATGCCATGGAAGATTTACTGCATTATGTATTGTATACTGGCCTTGGATGGGAAATTGGCAATGAAGGGCAGATACTCTTCACGGATCCACTTTGTACTCCAAAGGCTAACAAGGAACAGTTAGTGCAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCTTCTGAACAAGCAGTGCTGTCACTATATGCTGTAGGACGTATCTCTGGATGCACAGTTGACATTGGTCATGGAAAAATAGATATTGCACCAGTGATTGAGGGTGCTGTTAACCACATTGCCTCTAGAAGATTTGAGTTTGGAGGTATCGATCTAACTAATTTCCTTGCTCAAGAACTTTGCAAATCCAATCCACGAGTGAATCTCAACATCTCTGAAGTTGAGAAAATAAAACAGCTATACTCATGTTGTGCTGAAGATGAATTAGCTTATCAGCAGACTCAAGATTCTTGCCCTGTGGAGACACATACCCTTCCTGACGGACAGGTCATTAAAATTGGAAGAGAAAGGTATACCATTGGGGAAGCTTTGTTTCAGCCATGTCTATTAGGTTTAGAGGCTCATGGCATTGTTGACCAGCTCGTCCGTACTATTTCAAATGTGTCATCTGATAATCATCGCCAACTTCTTGAAAATACCGTGGTTTGTGGTGGCACTTCTTCTATGACCGGTTTTGAGGAAAGATTTCAGAAGGAATCTAGCCTAAGTTCATCTGCTATTCGACCTACCCTAGTAAAGCCTCCAGAATACATGCCAGAAAATTTAACCGTGTACTCTGCATGGGTGGGAGGTGCCATACTTGCCAAAGTAGTTTTTCCTCAAAATCAGCATGTAACTAAGGCAGACTATGATGAAACTGGGCCTTCCATTGTTCACAGGAAATGCTTTTGA 1086 0.4337 MEAAVVDPGSSLLKAGFAIPDQTPAMIIPTQMKRMLDDGSVTDNPTVDDVSVDPVYRGYVRDWDAMEDLLHYVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGIDLTNFLAQELCKSNPRVNLNISEVEKIKQLYSCCAEDELAYQQTQDSCPVETHTLPDGQVIKIGRERYTIGEALFQPCLLGLEAHGIVDQLVRTISNVSSDNHRQLLENTVVCGGTSSMTGFEERFQKESSLSSSAIRPTLVKPPEYMPENLTVYSAWVGGAILAKVVFPQNQHVTKADYDETGPSIVHRKCF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10678g00010 361 CDD NBD_sugar-kinase_HSP70_actin 4 192 - -
Vium10678g00010 361 PANTHER ACTIN 4 354 IPR004000 -
Vium10678g00010 361 Gene3D - 123 324 - -
Vium10678g00010 361 Gene3D - 5 355 - -
Vium10678g00010 361 Pfam Actin 2 361 IPR004000 -
Vium10678g00010 361 FunFam Actin-related protein 7 165 252 - -
Vium10678g00010 361 FunFam Actin-related protein 7 4 127 - -
Vium10678g00010 361 Gene3D Actin; Chain A, domain 4 165 252 - -
Vium10678g00010 361 SMART actin_3 1 361 IPR004000 -
Vium10678g00010 361 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Vium10678g00010 361 SUPERFAMILY Actin-like ATPase domain 131 361 IPR043129 -
Vium10678g00010 361 PRINTS Actin signature 100 113 IPR004000 -
Vium10678g00010 361 PRINTS Actin signature 217 233 IPR004000 -
Vium10678g00010 361 PRINTS Actin signature 45 67 IPR004000 -
Vium10678g00010 361 PRINTS Actin signature 125 144 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10678g00010 Vium-Chr10678 45228 52530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10678g00010 5 361 Cytoskeleton Gene Families AT3G12110 36.968 6.12e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10678g00010 K16615 - gmx:100794153 682.559