Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10678g00006 ATGCTGTCTTCAAATGTTGTTCCATCATCTTCCCCTCTCACTTTCACCAAACCCAATCCCCATTTCTTCATCAATGCATCTTCCCATCTCAAACCAAATCTTCTCACAAGGTTTCAGACCCAACACAGAGCCACTCCTCTCCAAAGTTCCAAACTTTCTTTCACCCCAACATCTCAGATCCAACATGCAATCTCAAAGGTAAGATCTTTCAACGGATACCTTCTTCACCCTCTTCAGCCCTCGTCAAAACCCAGGCTTCAAATCGTTAAGGCTGCGTCTGAAACCAATCCTGGAGGAGAAAATGTTGACCCCAGTGTCCCCAAATCCAAGAATCTCAAACTTGCTCTGGTGTTTGGGCTATGGTACTTCCAGAACATCGTGTTCAACATTTACAACAAGAAAGTGCTAAACATATTCCCTTTCCCATGGCTTCTTGCTTCTTTCCAGCTCTTGGTTGGGTCCATTTGGATGCTGGTGCTTTGGTCCTCTAAGCTCCAACCTTGTCCGAAAATCTCGAAACCATTCATCGTTGCTCTCCTTGGACCTGCTTTGTTCCACACAATAGGCCACATTTCAGCTTGTGTGTCATTCTCCAAGGTGGCTGTGTCCTTCACCCATGTCATCAAATCTGCAGAACCGGTTTTCTCTGTCATATTTTCCTCTGTCCTTGGTGATAGATACCCCATTCAGGTTTGGCTCTCCATTCTACCCATTGTGCTTGGTTGTTCTTTAGCTGCTGTTACTGAGGTGTCTTTCAATGTACAAGGATTGTGGGGTGCCCTCATTAGCAATGTTGGTTTTGTGTTGAGGAACATCTACTCTAAGAGAAGTTTGCAGAATTTCAAGGAAGTTGATGGCTTAAACTTGTATGGCTGGATTACCATTTTTTCATTCCTGTACCTGTTTCCAGTGGCTATTTTTGTTGAAGGGTCTCAGTGGATCCCTGGGTATTACAAGGCCATTGAAGCTATAGGAAAACCATCCACATTTTATATCTGGGTGCTGTTGTCTGGGGTTTTCTACCATCTTTACAATCAATCATCATACCAAGCACTTGATGAAATTAGCCCATTGACTTTCTCTGTGGGAAACACAATGAAAAGAGTGGTGGTGATTGTATCTACGGTTTTGGTGTTCAGGAATCCTGTTCGACCTCTTAATGCCCTTGGATCTGCCATTGCAATTCTTGGGACTTTCCTGTATTCACAGGCAACATCCAAAAAGAAAGAAAAGAAAATTGAAGGGGAAAAGAGTAGTTAG 1260 0.4341 MLSSNVVPSSSPLTFTKPNPHFFINASSHLKPNLLTRFQTQHRATPLQSSKLSFTPTSQIQHAISKVRSFNGYLLHPLQPSSKPRLQIVKAASETNPGGENVDPSVPKSKNLKLALVFGLWYFQNIVFNIYNKKVLNIFPFPWLLASFQLLVGSIWMLVLWSSKLQPCPKISKPFIVALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFSVIFSSVLGDRYPIQVWLSILPIVLGCSLAAVTEVSFNVQGLWGALISNVGFVLRNIYSKRSLQNFKEVDGLNLYGWITIFSFLYLFPVAIFVEGSQWIPGYYKAIEAIGKPSTFYIWVLLSGVFYHLYNQSSYQALDEISPLTFSVGNTMKRVVVIVSTVLVFRNPVRPLNALGSAIAILGTFLYSQATSKKKEKKIEGEKSS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10678g00006 419 PANTHER SOLUTE CARRIER FAMILY 35 113 408 - -
Vium10678g00006 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 292 405 - -
Vium10678g00006 419 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 112 412 IPR004696 GO:0016020|GO:0022857|GO:0055085
Vium10678g00006 419 Pfam Triose-phosphate Transporter family 112 402 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10678g00006 Vium-Chr10678 24542 26219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10678g00006 24 417 Antiporters AT5G17630 68.810 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10678g00006 K15283 - gmx:100101869 714.531