Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1066g00003 ATGAATTCAGCATCCCCACAGTTCGTTTCCTCGAGAAGGATGAGTGTGTACGATCCAATCCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGTAATTTAAGTGCATCCATGCCTTTAATAGACGAGACAGACATGAAGTTAGATAGTCAGTCAGAGGATGCTTCTCATGGAATACTGGGAGCACCTAATAAGTATGACCAAGAAGCAAACAAACCTACTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGAAAGAGCCGTTTGAGGAAAAAGGCTTACGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAACTCGAACGTGCAAGACAGCAGGGAATGTACATTGGTGGTGGGTTGGACTCTAATCATCTGGGTTTTGCTGGACCGGTAAATTCAGGAATTACAACATTCGAGATGGAGTACGGACACTGGGTGAACGAGCAAAATAGGCAAATAACAGAACTGAGAACCGCTTTAAATGCTCATATCGGTGACATAGAGCTCAGGATTCTGGTAGATGGTATGATGAACCACTACGCTGAAATCTTTCGCATGAAATCTGCTGCTGCAAAAGCGGATGTGTTCTATGTCATGTCTGGTATGTGGAAAACAACGGCCGAAAGATTTTTCCTTTGGATAGGAGGCTTTCGCCCCTCTGAGCTTCTAAAGGTTCTTGGCCCCCTGATTGAGCTTCTCACAGAGCAACAACAGTTGGATATATATAACCTTGGACAATCATGTCAACAAGCAGAAGATGCTCTGTCACAAGGTATGGACAAACTCCGGCAAACTCTTGCTGATAGTGTAGCAGCCGGGCAGTTCATGGAAGGAACGTACATTCCACAGATGACTTGTGCAATGGAGAAGTTGGAAGCTCTGGTGAGCTTTGTGAACCAGGCTGACCATCTTCGGCAGGGAACGTTGCAGCAGATGTCTCGAATACTTACAATCCGTCAGGCTGCTCGATGCTTGCTTGCTTTGGGAGAATATTTCCAACGCCTGAGGGCTTTGAGCTCACTCTGGTCTAACAGACCCCGTGAACCTGCTTAG 1089 0.4582 MNSASPQFVSSRRMSVYDPIHQISMWGEGFKSNGNLSASMPLIDETDMKLDSQSEDASHGILGAPNKYDQEANKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYIGGGLDSNHLGFAGPVNSGITTFEMEYGHWVNEQNRQITELRTALNAHIGDIELRILVDGMMNHYAEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPLIELLTEQQQLDIYNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQFMEGTYIPQMTCAMEKLEALVSFVNQADHLRQGTLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1066g00003 362 Gene3D - 77 126 - -
Vium1066g00003 362 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700|GO:0006355
Vium1066g00003 362 PANTHER TRANSCRIPTION FACTOR TGA9 2 360 - -
Vium1066g00003 362 SMART brlzneu 74 145 IPR004827 GO:0003700|GO:0006355
Vium1066g00003 362 CDD bZIP_HBP1b-like 78 130 - -
Vium1066g00003 362 Pfam Seed dormancy control 164 238 IPR025422 GO:0006351|GO:0043565
Vium1066g00003 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Vium1066g00003 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Vium1066g00003 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Vium1066g00003 362 Coils Coil 97 124 - -
Vium1066g00003 362 FunFam BZIP family transcription factor 77 126 - -
Vium1066g00003 362 Pfam bZIP transcription factor 76 112 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1066g00003 Vium-Chr1066 7312 14529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1066g00003 1 362 Calmodulin-binding Proteins AT5G10030 70.879 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1066g00003 DOG1 2.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1066g00003 K14431 - gmx:100793353 681.404