Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10663g00002 ATGGCCAGAAAAAACGAGGGATGTGCAGTGGGGATAGACCTCGGAACAACGTACTCGTGTGTTGCAGTATGGCAGGAGCAGCAGGGGCGAGTGGAGATCATCCACAATGACCAAGGCAACAACATCACTCCTTCTTTTGTTGCTTTCACAGACAAACAAAGATTGATAGGTGATGCTGCTAAAAACCAGGCTGCCACCAATCCAGAGAACACTGTGTTTGATGCTAAAAGATTAATTGGTCGGAAGTGCAGTGATCCCATTGTTGAAAAAGATAAAAGGTTGTGGCCATTCAAGGTCATTCCTGGTGACGATGACAAACCCATGGTTGTAGTTAACTACAAGGGTCAGCAAAAGCACCTTTCAGCCGAGGAAATATCATCAATGGTTCTCTCAAAAATGAGGGAGATTGCAGAGACCTTTCTGGAAAAACCTGTGAGGAATGCAGTGGTTACTGTTCCTGCTCATTTCAATGACTCTCAGCGTAAAGCTACAGTAGATGCAGGAACCATTGCTGGCCTCAATGTTATGCGGATAATCAATGAACCCACAGCTGCAGCTATTGCATATGGTCTTGACAAGAGAACCAAAAGTGTTGGAGAGAGAAATGTTTTCGTATTTGACCTCGGAGGTGGTACCTTTGACGTGTCTATCCTCACAATTAAGGATAAGGTGTTCCAAGTTAAGGCTACTGCAGGAAACACTCATCTTGGGGGAGAAGACATTGATAACAGAATGGTGGAGTACTTTGTGGAGCATATCAAAAGGAAATACAAAGTGGACATTAGTGGGAACCCAAGAGCTCTAAGGAGGTTGAGAACTGCATGCGAAAGAGCAAAAAGGACACTCTCGTCTACACTCACTACAAACATTGAGATAGATGCCTTATTTCAAGGTATTGACTTCTGTTCTTCGATCACTCGTGCAAAGTTCGATGAAATCAATATGGAGCTCTTTGAAGAGTGTATGGAGACCGTAGATAGATGTCTCAGCGATGCTAAGATGGACAAGAACAGTGTGCATGATGTTGTACTGGTTGGTGGCTCTTCTAGGATTCCTAAAGTGCAGCAACTATTGCAGGAGTTCTTCAAGGGAAAGGATCTGTGCAAGAGCATCAACCTTGACGAAGCTGTTGCTAACGGTGCAGCTGTTCAAGCTGCTTTGTTGTGTGAAGGCATTGAGAATGTTCCTGACCTGGTGTTGTTGGATGTGACACCGCTGTCACTTGGTACATATACAACGGGAGATATCATGAATGTAATGATTCCTAGGAATACTGGAATTCCTGTAAAGAGGACAGAAGAGTTTGGAACAGTTTATGATGATCAAACCAGTGCCTCGATTAAAGTTTATGAGGGTGAAAGAACAAAAGCGAGTGAGAACAATTTGCTGGGGCTTTTTAGTCTTACCTTTCCTCCAGCTCCTCGTGGCTATCCTATTCTTGTGTGCTTTGGCATTGATGAAAATGGTACTCTATCTGTTTCTGCCGAGGATCAAACCACGGGCAATAAGAACCAGATTACCATAACCAACAACAAAGAGAGACTGTCAGCTGAAGAAATGAGTAGAATGATTAAAGAAGCTAAAATTTATGAGGCCGACGATAGGAAGTTCCTCAGGAAGGCTAACGCAATGAATTCTTTGGATGATTATGTTTACAAGATGACGAATGCTTTGAAGGACAAGTATAACAGATCAAAGCTTTCCTTGACACAAAAGTTGAACATCAGTTCTGCAATTACTAAGGCCACATATTTGCTTGATGATGATAACCAGCAGGTTGAAGTAGATGTATTTGAGAATTATCTGAAGGAACTCGAGAGTCTCTTTGGTCAGACAGACATCAATGGTTAG 1851 0.4279 MARKNEGCAVGIDLGTTYSCVAVWQEQQGRVEIIHNDQGNNITPSFVAFTDKQRLIGDAAKNQAATNPENTVFDAKRLIGRKCSDPIVEKDKRLWPFKVIPGDDDKPMVVVNYKGQQKHLSAEEISSMVLSKMREIAETFLEKPVRNAVVTVPAHFNDSQRKATVDAGTIAGLNVMRIINEPTAAAIAYGLDKRTKSVGERNVFVFDLGGGTFDVSILTIKDKVFQVKATAGNTHLGGEDIDNRMVEYFVEHIKRKYKVDISGNPRALRRLRTACERAKRTLSSTLTTNIEIDALFQGIDFCSSITRAKFDEINMELFEECMETVDRCLSDAKMDKNSVHDVVLVGGSSRIPKVQQLLQEFFKGKDLCKSINLDEAVANGAAVQAALLCEGIENVPDLVLLDVTPLSLGTYTTGDIMNVMIPRNTGIPVKRTEEFGTVYDDQTSASIKVYEGERTKASENNLLGLFSLTFPPAPRGYPILVCFGIDENGTLSVSAEDQTTGNKNQITITNNKERLSAEEMSRMIKEAKIYEADDRKFLRKANAMNSLDDYVYKMTNALKDKYNRSKLSLTQKLNISSAITKATYLLDDDNQQVEVDVFENYLKELESLFGQTDING 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10663g00002 616 FunFam Heat shock cognate 70 kDa protein 2 321 368 - -
Vium10663g00002 616 PANTHER HEAT SHOCK PROTEIN 70KDA 9 569 IPR013126 GO:0005524|GO:0140662
Vium10663g00002 616 FunFam Heat shock 70 kDa 237 320 - -
Vium10663g00002 616 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Vium10663g00002 616 Gene3D - 544 612 IPR029048 -
Vium10663g00002 616 Gene3D - 73 128 - -
Vium10663g00002 616 PRINTS 70kDa heat shock protein signature 8 21 - -
Vium10663g00002 616 PRINTS 70kDa heat shock protein signature 60 68 - -
Vium10663g00002 616 PRINTS 70kDa heat shock protein signature 371 391 - -
Vium10663g00002 616 PRINTS 70kDa heat shock protein signature 476 492 - -
Vium10663g00002 616 PRINTS 70kDa heat shock protein signature 148 168 - -
Vium10663g00002 616 PRINTS 70kDa heat shock protein signature 339 355 - -
Vium10663g00002 616 PRINTS 70kDa heat shock protein signature 397 416 - -
Vium10663g00002 616 PRINTS 70kDa heat shock protein signature 38 50 - -
Vium10663g00002 616 PRINTS 70kDa heat shock protein signature 211 221 - -
Vium10663g00002 616 FunFam heat shock 70 kDa protein-like 73 128 - -
Vium10663g00002 616 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 609 IPR029048 -
Vium10663g00002 616 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 393 548 IPR029047 -
Vium10663g00002 616 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vium10663g00002 616 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vium10663g00002 616 Gene3D - 10 386 - -
Vium10663g00002 616 Pfam Hsp70 protein 9 608 IPR013126 GO:0005524|GO:0140662
Vium10663g00002 616 Gene3D Actin; Chain A, domain 4 237 320 - -
Vium10663g00002 616 SUPERFAMILY Actin-like ATPase domain 200 388 IPR043129 -
Vium10663g00002 616 FunFam Heat shock protein 70 10 202 - -
Vium10663g00002 616 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Vium10663g00002 616 FunFam Heat shock 70 kDa protein 392 544 - -
Vium10663g00002 616 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 392 543 IPR029047 -
Vium10663g00002 616 Gene3D - 194 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10663g00002 Vium-Chr10663 1010 3431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10663g00002 1 608 Calmodulin-binding Proteins AT3G12580 67.921 0.0 835