Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10663g00001 GGGAAAGAACTGTGCACGAGCATCAACCCTGACGAGGCTGTTGCCTATGGAGCAGCAGTTCAGGCTGCTTTGCTGACTAAAGGCAAGAAATTTGTCCCCAACTTAGTGCTATTAGATGTTACGCCGCTGTCACTCGGTACATCTGTAAAAGGAGATCTCATGAGTGTCGTGATTCCTAGGAACACCACCATTCCTGTTGTAAAAAAGAAAGGATTTGTAACAGTCAAAGATTTCCAATCTATTGTCTGTATTGATGTTTACGAGGGTGAAAGGACAAGAGCAAGCGATAACAATTTGCTTGGTTTCTTTAATCTCAATGGCAATCCTAAAGCTCTTCGAGGCCATCCTGTAACCGTATGTTTCAGTATAGATGATGATGGTATCCTAACTGTAATTGCTGAGGATGAAACCATTGGAAGTAAGAATTGGATTACCGTAACCAACGAAAACGGAAAACTATCAACTCAACAAATTATGAGAATGATTCAAGAAGGCGAGAAATACAAGGCTGAAGACCAGAAGTACGAAAAGAAAGTTAAAGCAATTAATGCTTTGGATGACTTCGTTTACAAGATAAGGAATGCTATAGATGATGTACATAATCCAAAAGAGAAAACGAATATCAACAAGGCAATTGCAGAGGCCGAGAAATTGCTTGATGCTAGGGAGAAGACAGAAACAGAGGTTTTTGTGGATCATCTGCACAGGGTGAAGAGCCTCATTAAACCCATTATGAAGATTAACTAG 747 0.4029 GKELCTSINPDEAVAYGAAVQAALLTKGKKFVPNLVLLDVTPLSLGTSVKGDLMSVVIPRNTTIPVVKKKGFVTVKDFQSIVCIDVYEGERTRASDNNLLGFFNLNGNPKALRGHPVTVCFSIDDDGILTVIAEDETIGSKNWITVTNENGKLSTQQIMRMIQEGEKYKAEDQKYEKKVKAINALDDFVYKIRNAIDDVHNPKEKTNINKAIAEAEKLLDAREKTETEVFVDHLHRVKSLIKPIMKIN 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10663g00001 248 PANTHER HEAT SHOCK PROTEIN 70KDA 1 214 IPR013126 GO:0005524|GO:0140662
Vium10663g00001 248 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 33 186 IPR029047 -
Vium10663g00001 248 Gene3D - 183 247 IPR029048 -
Vium10663g00001 248 Coils Coil 208 228 - -
Vium10663g00001 248 PRINTS 70kDa heat shock protein signature 34 53 - -
Vium10663g00001 248 PRINTS 70kDa heat shock protein signature 8 28 - -
Vium10663g00001 248 PRINTS 70kDa heat shock protein signature 114 130 - -
Vium10663g00001 248 Pfam Hsp70 protein 1 246 IPR013126 GO:0005524|GO:0140662
Vium10663g00001 248 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 181 245 IPR029048 -
Vium10663g00001 248 FunFam Heat shock 70 kDa protein 28 182 - -
Vium10663g00001 248 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 31 182 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10663g00001 Vium-Chr10663 4 843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10663g00001 1 245 Calmodulin-binding Proteins AT3G12580 53.968 8.45e-81 253