LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium10660g00004	ATGCCTGAAAAGTCACACATCTGCACATGGCTAATTCATGTCTCACTGACACTTCTCACTGTAACAGCAACATCGTCATCGTTATCATCATCACACTGTGCCATGGCCGTCACGCCCTCCACCTCTCTCCTCTCCTTCCTCCAACGCCTCCAAAAAACCGCCTTCGAAGCGTTCGGCGGTCCCGATTTCGATCCCAAGACCTACGTCGACGTGCCTCTTAAGTTCGCACTATCCGTCACCCAGGACGCGTTCCAGAAGCTTCCGCGTAACGCCGACGGCACCGTGCCGGCTGAAGATTTAAAGCGCTTTCTAGAAGCCTATTTCGGAGGTGCAGGGGACGATCTGGTGCACCTGACCCCACACGATTTCGTTCGCGAACCGGAGGGTTTCTTGCCCAAGGTCAAACACCCTCAGGTGCGGGCCTGGGCCTTGCAGGTCCATTGGCTTTGGAAAAACTTGACCCGGAAAGTATCCGATGCGGTGCAGGCGCACCCGGATTTGCATACGCTGCTCCCTCTCCCCGGTTCCGTTGTCATTCCCGGTTCGCGTTTTCGCGAGGTTTATTACTGGGATTCTTACTGGGTTATTAGGGGCCTGATCGCGAGTAAAATGCACGACACTGCTACTGCTATTGTGACCAACCTCATTTCCTTGATAGAACAATATGGATTTGTTCTTAATGGTGCTAGAGCATACTACAGTAACAGGAGCCAGCCTCCTCTTTTAAGCGCTATGATTTATGAGATATACCGTACCACCGGTGACGTGGAATTGGTTAAAAGATCTCTACCTGCACTAATCAAAGAGTATGAATTTTGGAATTCAGATATACACAAGGTGACCATTTTGGATGCTCAAGGTTGCACTCACACCTTAAATCGCTATAATGCAATGTGGGACAAACCCAGGCCAGAATCATCCATTAAGGACCAGGTATTTGCTTCCAACTTCTCGAGTGTTTCAGAAAAACAGCAGTTTTACCGTGACCTGGCTTCAGCTGCTGAATCAGGATGGGATTTCAGCACTAGATGGATGAGAAACCCGCCTAATTTCACAACATTGGCTACAACTTCCGTAATACCTGTTGATTTAAATGCATTTATACTCGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTGTTGGAGATAATGGCACTGCTGAACGGTTCCTGGAAAATGCTGATCTTAGAAAGAAGGCAATGGACTCTGTTTTCTGGAATGCAAACATGAAACAATGGCTTGACTACTGGCTCGAAAATACATGTGAGGAGGTTCATGTTTGGAAAAACGGGCGCCAGAATAAAAATGTATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAACCATTTTATTCAGACACTTCACTTGTGGCTAGTGTCGTTGAAAGTCTCAAAACTTCCAACCTTGTCCGTGCCGCTGGAGTTGCAACTTCTTTGACTGATTCAGGACAACAGTGGTAA	1464	0.472	MPEKSHICTWLIHVSLTLLTVTATSSSLSSSHCAMAVTPSTSLLSFLQRLQKTAFEAFGGPDFDPKTYVDVPLKFALSVTQDAFQKLPRNADGTVPAEDLKRFLEAYFGGAGDDLVHLTPHDFVREPEGFLPKVKHPQVRAWALQVHWLWKNLTRKVSDAVQAHPDLHTLLPLPGSVVIPGSRFREVYYWDSYWVIRGLIASKMHDTATAIVTNLISLIEQYGFVLNGARAYYSNRSQPPLLSAMIYEIYRTTGDVELVKRSLPALIKEYEFWNSDIHKVTILDAQGCTHTLNRYNAMWDKPRPESSIKDQVFASNFSSVSEKQQFYRDLASAAESGWDFSTRWMRNPPNFTTLATTSVIPVDLNAFILGMELNIAFFAKVVGDNGTAERFLENADLRKKAMDSVFWNANMKQWLDYWLENTCEEVHVWKNGRQNKNVFASNFVPLWMKPFYSDTSLVASVVESLKTSNLVRAAGVATSLTDSGQQW	487

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium10660g00004	487	PANTHER	TREHALASE	28	487	IPR001661	GO:0004555\|GO:0005991
	Vium10660g00004	487	Pfam	Trehalase	63	487	IPR001661	GO:0004555\|GO:0005991
	Vium10660g00004	487	Gene3D	-	54	487	IPR012341	GO:0005975
	Vium10660g00004	487	ProSiteProfiles	EF-hand calcium-binding domain profile.	75	110	IPR002048	GO:0005509
	Vium10660g00004	487	SUPERFAMILY	Six-hairpin glycosidases	63	487	IPR008928	GO:0005975
	Vium10660g00004	487	PRINTS	Glycosyl hydrolase family 37 signature	222	240	IPR001661	GO:0004555\|GO:0005991
	Vium10660g00004	487	PRINTS	Glycosyl hydrolase family 37 signature	402	418	IPR001661	GO:0004555\|GO:0005991
	Vium10660g00004	487	PRINTS	Glycosyl hydrolase family 37 signature	479	487	IPR001661	GO:0004555\|GO:0005991
	Vium10660g00004	487	PRINTS	Glycosyl hydrolase family 37 signature	292	309	IPR001661	GO:0004555\|GO:0005991
	Vium10660g00004	487	PRINTS	Glycosyl hydrolase family 37 signature	327	344	IPR001661	GO:0004555\|GO:0005991
	Vium10660g00004	487	PRINTS	Glycosyl hydrolase family 37 signature	359	376	IPR001661	GO:0004555\|GO:0005991

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium10660g00004	Vium-Chr10660	13026	17025	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium10660g00004	37	487	Trehalose Biosynthesis Gene Families	AT4G24040	58.022	0.0	554

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium10660g00004	K01194		-	gmx:547539	815.839