Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10660g00003 ATGGCCGTCACGCCCTCCACCTCTCTCCTCTCCTTCCTCCAACGCCTCCAAAAAACCGCCTTCGAAGCGTTCGGCGGTCCCGATTTCGATCCCAAGACCTACGTCGACGTGCCTCTTAAGTTCGCACTATCCGTCACCCAGGACGCGTTCCAGAAGCTTCCGCGTAACGCCGACGGCACCGTGCCGGCTGAAGATTTAAAGCGCTTTCTAGAAGCCTATTTCGGAGGTGCAGGGGACGATCTGGTGCACCTGACCCCACACGATTTCGTTCGCGAACCGGAGGGTTTCTTGCCCAAGGTCAAACACCCTCAGGTGCGGGCCTGGGCCTTGCAGGTCCATTGGCTTTGGAAAAACTTGACCCGGAAAGTATCCGATGCGGTGCAGGCGCACCCGGATTTGCATACGCTGCTCCCTCTCCCCGGTTCCGTTGTCATTCCCGGTTCGCGTTTTCGCGAGGTTTATTACTGGGATTCTTACTGGGTTATTAGGGGCCTGATCGCGAGTAAAATGCACGACACTGCTACTGCTATTGTGACCAACCTCATTTCCTTGATAGAACAATATGGATTTGTTCTTAATGGTGCTAGAGCATACTACAGTAACAGGAGCCAGCCTCCTCTTTTAAGCGCTATGATTTATGAGATATACCGTACCACCGGTGACGTGGAATTGGTTAAAAGATCTCTACCTGCACTAATCAAAGAGTATGAATTTTGGAATTCAGATATACACAAGGTGACCATTTTGGATGCTCAAGGTTGCACTCACACCTTAAATCGCTATAATGCAATGTGGGACAAACCCAGGCCAGAATCATCCATTAAGGACCAGGTATTTGCTTCCAACTTCTCGAGTGTTTCAGAAAAACAGCAGTTTTACCGTGACCTGGCTTCAGCTGCTGAATCAGGATGGGATTTCAGCACTAGATGGATGAGAAACCCGCCTAATTTCACAACATTGGCTACAACTTCCGTAATACCTGTTGATTTAAATGCATTTATACTCGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTGTTGGAGATAATGGCACTGCTGAACGGTTCCTGGAAAATGCTGATCTTAGAAAGAAGGCAATGGACTCTGTTTTCTGGAATGCAAACATGAAACAATGGCTTGACTACTGGCTCGAAAATACATGTGAGGAGGTTCATGTTTGGAAAAACGGGCGCCAGAATAAAAATGTATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAACCATTTTATTCAGACACTTCACTTGTGGCTAGTGTCGTTGAAAGTCTCAAAACTTCCAACCTTGTCCGTGCCGCTGGAGTTGCAACTTCTTTGACTGATTCAGGACAACAGTGGTAA 1362 0.4743 MAVTPSTSLLSFLQRLQKTAFEAFGGPDFDPKTYVDVPLKFALSVTQDAFQKLPRNADGTVPAEDLKRFLEAYFGGAGDDLVHLTPHDFVREPEGFLPKVKHPQVRAWALQVHWLWKNLTRKVSDAVQAHPDLHTLLPLPGSVVIPGSRFREVYYWDSYWVIRGLIASKMHDTATAIVTNLISLIEQYGFVLNGARAYYSNRSQPPLLSAMIYEIYRTTGDVELVKRSLPALIKEYEFWNSDIHKVTILDAQGCTHTLNRYNAMWDKPRPESSIKDQVFASNFSSVSEKQQFYRDLASAAESGWDFSTRWMRNPPNFTTLATTSVIPVDLNAFILGMELNIAFFAKVVGDNGTAERFLENADLRKKAMDSVFWNANMKQWLDYWLENTCEEVHVWKNGRQNKNVFASNFVPLWMKPFYSDTSLVASVVESLKTSNLVRAAGVATSLTDSGQQW 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10660g00003 453 PANTHER TREHALASE 12 453 IPR001661 GO:0004555|GO:0005991
Vium10660g00003 453 PRINTS Glycosyl hydrolase family 37 signature 325 342 IPR001661 GO:0004555|GO:0005991
Vium10660g00003 453 PRINTS Glycosyl hydrolase family 37 signature 188 206 IPR001661 GO:0004555|GO:0005991
Vium10660g00003 453 PRINTS Glycosyl hydrolase family 37 signature 293 310 IPR001661 GO:0004555|GO:0005991
Vium10660g00003 453 PRINTS Glycosyl hydrolase family 37 signature 445 453 IPR001661 GO:0004555|GO:0005991
Vium10660g00003 453 PRINTS Glycosyl hydrolase family 37 signature 368 384 IPR001661 GO:0004555|GO:0005991
Vium10660g00003 453 PRINTS Glycosyl hydrolase family 37 signature 258 275 IPR001661 GO:0004555|GO:0005991
Vium10660g00003 453 Pfam Trehalase 29 453 IPR001661 GO:0004555|GO:0005991
Vium10660g00003 453 Gene3D - 22 453 IPR012341 GO:0005975
Vium10660g00003 453 ProSiteProfiles EF-hand calcium-binding domain profile. 41 76 IPR002048 GO:0005509
Vium10660g00003 453 SUPERFAMILY Six-hairpin glycosidases 29 453 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10660g00003 Vium-Chr10660 12836 17025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10660g00003 3 453 Trehalose Biosynthesis Gene Families AT4G24040 58.022 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10660g00003 K01194 - gmx:547539 807.364