Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10651g00001 ATGGGTTGTTGTCTAACTAAAGATTCAGAACCAGAACGCAATGGTTACAGACATGCTGCGACAGGTGGTGTGCACACTCAGAAGACTCACGAACCTTTGGTCAACCAATCAAGAGTTCCTGCAAATCAACCATATCATATACAGGAAAAGCATACTGCATCCACTGCTCAGACAGTGCCTCAGATGCCATGGAAGCCTTCTGGTCCTGCCCCCAGTCCTAAACCTGTGGCTAGTGTTAAGCAAGACACAATTCTAGGGAAGCAATTTGAAGATGTGAAGCAGTTCTACACACTTGGAAAGGAATTGGGTAGAGGGCAATTTGGGGTGACATATCTTTGCACTGAGAATTCAACTGGGATTCAGTATGCCTGCAAGTCTATTTCTAAGAGGAAACTTGTGAGTAAATCTGATAAGGAGGATATAAAGAGGGAGATTCAGATTATGCAGCATTTGAGTGGGCAACCCAACATTGTTGAGTTCAAAGGGGCTTATGAGGATAGGCAATCAGTTCATGTTGTGATGGAGCTGTGCGCTGGTGGGGAGCTTTTTGATAGGATTATCGCCAAGGGGCATTACAGTGAGAGGGCTGCTGCTTCAATATGCAGACAAATTGTAAATGTAGTTCATATCTGCCATTTCATGGGTGTGATGCATAGGGATCTGAAGCCAGAGAATTTCTTGTTATCTAGTAGGGATGAAAATGCACTACTCAAGGCAACAGATTTTGGTTTATCCGTTTTCATTGAAGAAGGAAAGGTATATCGGGATATAGTTGGTAGTGCTTACTATGTTGCTCCTGAAGTTCTGCGGCGCAGATGTGGGAAAGAAATAGATATATGGAGTGCAGGAGTCATATTATATATCTTACTTAGTGGCGTCCCTCCATTTTGGGCTGAGTCTGAGAAGGGAATATTTGATGCCATACTGGAAGGTCACATTGATTTTGAAAGTCAACCATGGCCAAACATTTCAAACAGTGCCAAGGATCTAGTTCGTAAGATGCTCATACAGGATCCAAAGAAACGTATAACCTCTGCTCAAGTTCTTGAGCACCCATGGATTAAAGATGGAAATGCTCCAGACAAGCCAATAGACAGTGCAGTACTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAGAAACTTGCCCTCAAGGTCATTGCTGAGAATATGTCTGCAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACAAGAGTGGTACAATCACCTATGAAGAACTAAAGGCGGGATTGCAAAGACTTGGCTCAAAGCTTACAGAAGCTGAAGTGAAACAGCTTATGGATGCTGCTGACGTAGATGGAAATGGCTCAATTGACTACATAGAGTTCATCACTGCTACTATGCATAGACACAAGTTAGAAAGAGATGACCAACTCTTCAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTATATTACAAGAGATGAGCTGGAATCAGCCATGAAAGAATATGGTATGGGTGATGATGCCACAATCAAGGAAATCATATCTGAAGTTGATACTATTATCTCTGAAGTGGACACGGATCATGATGGTAGAATCAACTATGAAGAATTCTCTGCAATGATGAAGAGTGGAAACCAACAAGGCAAGCTATTCTAA 1650 0.4194 MGCCLTKDSEPERNGYRHAATGGVHTQKTHEPLVNQSRVPANQPYHIQEKHTASTAQTVPQMPWKPSGPAPSPKPVASVKQDTILGKQFEDVKQFYTLGKELGRGQFGVTYLCTENSTGIQYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDRQSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSRDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAESEKGIFDAILEGHIDFESQPWPNISNSAKDLVRKMLIQDPKKRITSAQVLEHPWIKDGNAPDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSAEEIQGLKAMFTNMDTDKSGTITYEELKAGLQRLGSKLTEAEVKQLMDAADVDGNGSIDYIEFITATMHRHKLERDDQLFKAFQYFDKDNSGYITRDELESAMKEYGMGDDATIKEIISEVDTIISEVDTDHDGRINYEEFSAMMKSGNQQGKLF 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10651g00001 549 CDD EFh 401 460 IPR002048 GO:0005509
Vium10651g00001 549 ProSiteProfiles EF-hand calcium-binding domain profile. 396 431 IPR002048 GO:0005509
Vium10651g00001 549 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Vium10651g00001 549 ProSiteProfiles EF-hand calcium-binding domain profile. 468 503 IPR002048 GO:0005509
Vium10651g00001 549 FunFam Calcium-dependent protein kinase 1 98 181 - -
Vium10651g00001 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Vium10651g00001 549 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Vium10651g00001 549 ProSiteProfiles EF-hand calcium-binding domain profile. 510 545 IPR002048 GO:0005509
Vium10651g00001 549 CDD EFh 472 540 IPR002048 GO:0005509
Vium10651g00001 549 FunFam calcium-dependent protein kinase 1 182 360 - -
Vium10651g00001 549 Gene3D - 361 545 - -
Vium10651g00001 549 Pfam Protein kinase domain 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10651g00001 549 SMART efh_1 436 464 IPR002048 GO:0005509
Vium10651g00001 549 SMART efh_1 514 542 IPR002048 GO:0005509
Vium10651g00001 549 SMART efh_1 400 428 IPR002048 GO:0005509
Vium10651g00001 549 SMART efh_1 472 500 IPR002048 GO:0005509
Vium10651g00001 549 MobiDBLite consensus disorder prediction 28 62 - -
Vium10651g00001 549 ProSiteProfiles Protein kinase domain profile. 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10651g00001 549 Gene3D Phosphorylase Kinase; domain 1 98 181 - -
Vium10651g00001 549 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Vium10651g00001 549 SUPERFAMILY EF-hand 377 541 IPR011992 -
Vium10651g00001 549 SMART serkin_6 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10651g00001 549 CDD STKc_CAMK 95 353 - -
Vium10651g00001 549 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
Vium10651g00001 549 SUPERFAMILY Protein kinase-like (PK-like) 95 375 IPR011009 -
Vium10651g00001 549 Coils Coil 418 438 - -
Vium10651g00001 549 MobiDBLite consensus disorder prediction 1 77 - -
Vium10651g00001 549 ProSitePatterns EF-hand calcium-binding domain. 523 535 IPR018247 -
Vium10651g00001 549 PANTHER SERINE/THREONINE-PROTEIN KINASE 89 535 - -
Vium10651g00001 549 Gene3D Transferase(Phosphotransferase) domain 1 182 360 - -
Vium10651g00001 549 FunFam Calcium-dependent protein kinase 1 361 543 - -
Vium10651g00001 549 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Vium10651g00001 549 Pfam EF-hand domain pair 471 540 IPR002048 GO:0005509
Vium10651g00001 549 Pfam EF-hand domain pair 401 461 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10651g00001 Vium-Chr10651 14893 22714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10651g00001 75 549 EF-hand Containing Proteins AT3G20410 81.420 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium10651g00001 Pkinase 2.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10651g00001 K13412 - gmx:547888 1050.81