Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10638g00002 ATGGAAAATAACGCCGAATCTGAGAAACCGAAAGGGAAAGGGATTCCAGTTCACGGTGGCAAGTACGTGCGCTACAACATCTTAGGCAACGTTTTCGAAGTCTATGCGAAGTACGCACCGCCTCTGCAACCCGTTGGTAGAGGCGCATACGGCATCGTTTGCTGCGCGACGAATTCGGAGACCGAAGAAGGAGTTGCGATTAAGAAGATTGGGAATGCGTTTGACAACAGGATCGACGCGAAGAGGACGCTCAGAGAAATCAAGCTTCTCTGCCACATGGAACATGATAACATAATTAAAATTAAGGACATAATTCGGCCAGCGGAGAGGGAGAATTTCAACGATGTGTATATTGTGTATGAGTTGATGGACACCGATCTGCATCAGATTATACAGTCTAATCAGGCTCTCACTGATGAGCACTGCCAGTACTTTTTATATCAACTCTTGCGAGGATTGAAGTACATACATTCTGCAAATGTTTTGCACCGAGATTTAAAACCAAGCAATTTACTTCTCAACGCAAACTGTGATCTCAAAATATGTGACTTTGGGCTGGCCAGAACAACCTCAGAGACGGACTTTATGACAGAATATGTTGTCACTCGTTGGTACAGGGCCCCTGAATTGTTATTGAATTGTTCAGAATATACTGCTGCTATTGATATTTGGTCGGTTGGTTGTATTTTAATGGAGATAATTAGAAGGGAGCCTTTATTTCCTGGTAAAGATTATGTTCAGCAGTTGGCCCTTATAACTGAGTTATTAGGTTCTCCAAATGACTCGGATCTTGGGTTCCTCAGAAGTGATAATGCAAAGAAATATGTTAAGCAGCTTCCACATATAGAGAAGAGGTCTTTTGCTGAGCGGTTTCCTGATACGTCCACGTTAGCAATTGATCTTGCTGAGAAAATGTTGGTCTTTGATCCCTCCAAGCGAATAACTGTCGAAGAAGCACTAAATCACCCATACATGGCAAGTCTTCATGAGATCAACGAGGAGCCCGTTTGCCCAACTCCTTTCATCTTTGATTTCGAACAGACGACTCTTAACGAAGAAGACATAAAGGAGCTCATATGGAGAGAGTCTCTAAACTTCAGCCAGGACCAGATGTTGGAATAG 1122 0.4314 MENNAESEKPKGKGIPVHGGKYVRYNILGNVFEVYAKYAPPLQPVGRGAYGIVCCATNSETEEGVAIKKIGNAFDNRIDAKRTLREIKLLCHMEHDNIIKIKDIIRPAERENFNDVYIVYELMDTDLHQIIQSNQALTDEHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILMEIIRREPLFPGKDYVQQLALITELLGSPNDSDLGFLRSDNAKKYVKQLPHIEKRSFAERFPDTSTLAIDLAEKMLVFDPSKRITVEEALNHPYMASLHEINEEPVCPTPFIFDFEQTTLNEEDIKELIWRESLNFSQDQMLE 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10638g00002 373 Gene3D Phosphorylase Kinase; domain 1 22 362 - -
Vium10638g00002 373 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vium10638g00002 373 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 38 326 - -
Vium10638g00002 373 Pfam Protein kinase domain 43 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10638g00002 373 Gene3D Transferase(Phosphotransferase) domain 1 123 352 - -
Vium10638g00002 373 ProSiteProfiles Protein kinase domain profile. 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10638g00002 373 SMART serkin_6 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10638g00002 373 SUPERFAMILY Protein kinase-like (PK-like) 42 331 IPR011009 -
Vium10638g00002 373 FunFam Mitogen-activated protein kinase 123 352 - -
Vium10638g00002 373 FunFam Mitogen-activated protein kinase 24 133 - -
Vium10638g00002 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Vium10638g00002 373 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10638g00002 Vium-Chr10638 52839 56931 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10638g00002 8 366 MAP Kinase Gene Family AT1G07880 79.387 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vium10638g00002 Pkinase 1.1e-71 CL0016