Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10638g00001 ATGAACAATAATGTTGGGAAAGGGAAAAGAGGTTTGGCAGAACGTAATCATATGATTTTTGACAAAAAGAGCCTCAATTTTGGAGTAGCCAATGGAGGGGTAAGTTCTGGATCATCAACAGAAGATGACCCAAGATTTAATAAGCTGAGTCAAGATGGAAACAATGGATTGAAGGGTCTGATTCAAATCAATGGGAGCTTGCAGGTTTCACAGCAACCACCTCAAGGGCCAGTCATTTGCTGGGAGAGATTTCTCCCTGTGAGATCAATAAAAGTTTTGCTGGTGGAAGATGATGATTCAACACGCCACGTTGTGCGTGCTCTTTTATGCAATTGTAGTTACGAAGTTACTGCTGTTTCCAATGGTCTTCAAGCCTGGAAAGTCCTAGAAAATCCAGAAAATTGCATCGGTCTGGTCTTAACAGAGGTAGCTATGCCAATTTTGTCTGGAATAGGTCTTTTGTGCAAGATCATGAACCACAAAACACTGAAGAATATCCCTGTGATTATGATGTCGTCTCATGATTCTATGGGTATCGTCTTTAAGTGTTTGTCAAAAGGTGCTGTTGACTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAATCTTTGGCAGCATGTCTGGAGAAGATGCCACAGTTCTAGCGGCAGTGGGAGTGAAAGTGCGACCAACTTCAGAAAATCTACGAAGTCAAGAAGTAATGATGCTTCTGAAAACAATAGTGACAGCAATGAGGAGAATGACTATGGAAGCAAAGGCTTGAGCATTCGAGATGGAAGTGACAATGGAAGTGGCACTCAGTCTAGCGGCAGTGGGAGTGAAAGTGCGACCAACTTCAGAAAATCTACGAAGTCAAGAAGTAATGATGCTTCTGAAAACAATAGTGACAGCAATGAGGAGAATGACTATGGAAGCAAAGGCTTGAGCATTCGAGATGGAAGTGACAATGGAAGTGGCACTCAGAGTTCGTGGACTAAATGTCTGGCTCAAGTTGGCAGTCCTCATCCACTTTCACCACATAAACAATTGGTTGATCCCCCTGATAGCACTTGTGCCCAAGTGATGCAAACGAAGACTGAAAAAGCTAGTAGTAGATGGGTGCATGCAACAGAAAAGGAGTGCCTTGAACTTATTGATCATCTTGATGATGTTGCAATGGGCAAGGACTTGGCTGTTGGAATATCTTTGAGTATGCAACTAGAGCATCGACTTGAGGGACTGTCTAGCAATCCAATGGGTAAAGGGGCAAATAAAATGTCTGATGATGATGATATGCAGATAGTTAAAGGACAGAGTAATGCCTGTGAAAAAGGAGAAATGGAATGCAATGGTGGTAAAACCAGGACACAGGAAAATCAGACTATGAATGTTATTGATGTTACTGATAGCAACAGTCCACAGGCTGAAAGCAGAGACTTGAACACTCCAAATGGGTTCTCTGGTTTCTCACTAACGAAAGAAAACTCTTGCCCCAAAGAGCATCCATCCCTGGAACTAACTTTGAAAAGGCTGGGAGAAGTAAGAGATCCTAAAAATGTCACGGGTGAAGAATGCAATGTTTTGAGACATTCAGACCAATCAGCATTGTCAAAATATAATACTGCTTCTTCTGCTAACCAGGCTCAAACAGGAAATGTAGGAAGCTGTTCTCCACTGGCCAATGGCTCAGCTGCACCTAATGCAGAGGTAATACACAACTTTCCATCTCACTCAAATGTCACTCCTCCAAACCAGCAATCTAATGGGAGCAACAACATCAATGACATGGCCTCCATTAATACATATCTTGGCACCAAACCTTGTACTTTTGACAAGATGCCAGAGTCTGTAAGAGGTTTGGGCTCATTTAATTCCTCTGAACTCCGAACAATACGGAACAATAGTATCTCTTCGTCTCAGAAGAAAACCTATGCCCGGGAAGAATATATGGAAATTGTTAGAGGACAAGTGGGAAGCTCTGAACATGACTTCAAAGCCGAGCACACTCATTATGAGCTTCACCATTATAATCACATTTCCCGTAAAGCGGCTGTAGATCTCCAATCAGATCATGATCTCTTACTCAAAAGATCAACCAACACTGCTCAGCAATGTGTATCATCAAATGCGTTTGGAGGGCCAGCAGAAAGTAATGCTGCAAACTACACAATAGATGGAAATGCTGGGGAGAGTGATCACGGGAGCAATGGACATGGGAGCAATGGACAGGACGGAACCATGACAATGAGGACAGTAAATGTGGAAAATGGCAATGTGGCTGTTGGGAGCATTGGAGTTGGTGGCATTGATAGGAAAACCATTGGGAATGGGGCAGATGAAGGACGACTTTCATTGAGAGAGGCTGCTTTGACCAAGTTTCGTCAAAAGAGAAAAGAAAGATGCTTTGAGAAAAGGGTTCGATATCATAGCAGGAAAAAACTAGCAGAACAGCGGCCTCGTATTAGGGGACAATTTGTTAGACGAATAGTGTCTGAAGCCAAAGAAGAAAAAGATCACCAAAGTGACAACCTGGTACCTGGGGATAATACCGACATTCCTCAATAA 2547 0.426 MNNNVGKGKRGLAERNHMIFDKKSLNFGVANGGVSSGSSTEDDPRFNKLSQDGNNGLKGLIQINGSLQVSQQPPQGPVICWERFLPVRSIKVLLVEDDDSTRHVVRALLCNCSYEVTAVSNGLQAWKVLENPENCIGLVLTEVAMPILSGIGLLCKIMNHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESATNFRKSTKSRSNDASENNSDSNEENDYGSKGLSIRDGSDNGSGTQSSGSGSESATNFRKSTKSRSNDASENNSDSNEENDYGSKGLSIRDGSDNGSGTQSSWTKCLAQVGSPHPLSPHKQLVDPPDSTCAQVMQTKTEKASSRWVHATEKECLELIDHLDDVAMGKDLAVGISLSMQLEHRLEGLSSNPMGKGANKMSDDDDMQIVKGQSNACEKGEMECNGGKTRTQENQTMNVIDVTDSNSPQAESRDLNTPNGFSGFSLTKENSCPKEHPSLELTLKRLGEVRDPKNVTGEECNVLRHSDQSALSKYNTASSANQAQTGNVGSCSPLANGSAAPNAEVIHNFPSHSNVTPPNQQSNGSNNINDMASINTYLGTKPCTFDKMPESVRGLGSFNSSELRTIRNNSISSSQKKTYAREEYMEIVRGQVGSSEHDFKAEHTHYELHHYNHISRKAAVDLQSDHDLLLKRSTNTAQQCVSSNAFGGPAESNAANYTIDGNAGESDHGSNGHGSNGQDGTMTMRTVNVENGNVAVGSIGVGGIDRKTIGNGADEGRLSLREAALTKFRQKRKERCFEKRVRYHSRKKLAEQRPRIRGQFVRRIVSEAKEEKDHQSDNLVPGDNTDIPQ 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10638g00001 848 MobiDBLite consensus disorder prediction 701 742 - -
Vium10638g00001 848 ProSiteProfiles Response regulatory domain profile. 91 209 IPR001789 GO:0000160
Vium10638g00001 848 MobiDBLite consensus disorder prediction 213 251 - -
Vium10638g00001 848 SUPERFAMILY CheY-like 88 214 IPR011006 -
Vium10638g00001 848 MobiDBLite consensus disorder prediction 826 848 - -
Vium10638g00001 848 FunFam Two-component response regulator-like PRR37 90 248 - -
Vium10638g00001 848 Gene3D - 89 249 - -
Vium10638g00001 848 MobiDBLite consensus disorder prediction 258 305 - -
Vium10638g00001 848 SMART REC_2 90 205 IPR001789 GO:0000160
Vium10638g00001 848 CDD psREC_PRR 92 195 - -
Vium10638g00001 848 ProSiteProfiles CCT domain profile. 780 822 IPR010402 GO:0005515
Vium10638g00001 848 Pfam Response regulator receiver domain 92 203 IPR001789 GO:0000160
Vium10638g00001 848 MobiDBLite consensus disorder prediction 213 324 - -
Vium10638g00001 848 MobiDBLite consensus disorder prediction 567 587 - -
Vium10638g00001 848 PANTHER TWO-COMPONENT RESPONSE REGULATOR 91 350 IPR045279 GO:0009736
Vium10638g00001 848 Pfam CCT motif 780 821 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10638g00001 Vium-Chr10638 547 42764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10638g00001 37 278 Response Regulator Gene Family AT5G60100 63.821 2.16e-85 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vium10638g00001 Response_reg 1.7e-20 CL0304