Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10635g00001 ATGGCCGGCGAACTCGCCGGTGACCACACGCCAGAACTCCTCTGTCTGGTCCACGACATCGCCGGAATGTGCGTCGGCTCCTCCTCCGCCGCACCCATTGCCACCGACGCCATGTTCCGCAAGGACTGTACCGATCTAGTTCGCCGGATCTCCCTCCTCACCCACTTGTTCGAGGAGATTAGAGAACTCAACAACAACAATGTTGTCGCTTCCGCTTCCTCGTCTTCTTCCTCCTCTTCCGCCGCATCTTGGTCCTCTGATCTTGTCTTCGCTCTTCAGTCTGCAAGAAGTTTGCTTTCCGTGGCCAGAAACTTCCGTTCCAATTGCTCCTCTGATGGAGCTGCAAAGACCATTGTCTTCCAATTTCAGTGTGTGACGTGGAAATTGGAGAAACTGTTGAGTGATTTGCCGTATGACAATTTGGACATCTCAGAGGAAGTCAAAGAACAGGTGGATTTGGTAAGAACGCAATTGAAACGAGCCTCAGAAAAATATGGGTTTATGATTTCAAAGATGCCATCTCATGAATTATCCAAGCCGCTGACTGAAGAAATTAGTCAGGTTCTTTCCAAATCCGTGGGTGGATTATACAAACAACATAGCTGTCCTGAAAATTTATCAGAACTAGACAGCATTTCTAAAAGCAATGGAGAGAATAATTGCAGCACAAATCGGCTTGGATCTCTCTTGGAAAGAGCAAGGAGCATCCCTGCATCTTCTGAAGTTCTCTTTTTGAATGAATCTGATCCTGAAAGTCAAGAAGTTTCTGAGACAAAAAGTCTACCTGAGGTTAAAAGGCCTGAAGCAATTGTGATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCGACGGGTCAGACGTATGAGAGATCTTATATACAGAGATGGATAGATTGTGGAAATACAACGTGTCCGAAAACTCAGCAGAAGCTCCAACATTTGACACTCACACCAAATTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATAGAGCACAACATCGAGCAGCCAACAGGACTAACTAATGGGAAAATAAAGAAGAGTGACGGGTCATTCAGAGACGTTACGGGTGACATAGCAGCAATTGAAGCTCTGATGCGGAAGCTCTCCAGCCGGTCTGTTGAGGAGCGTAGAGCGGCTGTTACTGAAATTCGATCGCTATCCAAACGAAGTACTGACAATAGGATACTAATTGCTGAAGCTGGAGCCATTCCAGTTCTAGTCAACCTTCTAACATCAGAAGATGTATTGACGCAAGACAATGCTGTTACTTCAATTTTAAACCTTTCCATTTATGAAAATAACAAAGGACTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGTGCTGGAACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTCTTCAGCTTGTCACTTGCAGATGAGAACAAAATTATAATTGGCGCTTCAGGAGCCATACCCGCTTTGGTAGAATTGCTCCAAAACGGGAGTCCTAGAGGAAAGAAGGATGCTGCAACAGCATTATTCAATTTATGCATTTACCAAGGAAACAAGGGCAGGGCCATTCGGGCAGGGATCATCACAGCATTGTTGAAAATGCTTACAGATTCAAGCAAATCAATGGTTGATGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAAATTGCTATAGTAAAAGCCAGCACTATACCAGTTTTGATAGATCTTTTGAGGACCGGATTGCCTCGCAATAAAGAGAATGCAGCTGCTATTCTTCTCGCCTTGTGCAAGAGGGATGCCGACAATCTTGCTTGTATAAGTAGACTTGGTGCCGTCATACCTCTCTCTGAACTTGCTCGAACTGGTACAGAGAGGGCCAAACGGAAGGCTACTTCATTACTGGAGCATCTTCGTAAGTTGCAGCAACTTTAA 1956 0.4499 MAGELAGDHTPELLCLVHDIAGMCVGSSSAAPIATDAMFRKDCTDLVRRISLLTHLFEEIRELNNNNVVASASSSSSSSSAASWSSDLVFALQSARSLLSVARNFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSDLPYDNLDISEEVKEQVDLVRTQLKRASEKYGFMISKMPSHELSKPLTEEISQVLSKSVGGLYKQHSCPENLSELDSISKSNGENNCSTNRLGSLLERARSIPASSEVLFLNESDPESQEVSETKSLPEVKRPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALMRKLSSRSVEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKIAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSELARTGTERAKRKATSLLEHLRKLQQL 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10635g00001 651 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Vium10635g00001 651 SUPERFAMILY RING/U-box 271 346 - -
Vium10635g00001 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 494 536 IPR000225 GO:0005515
Vium10635g00001 651 Pfam U-box domain 272 343 IPR003613 GO:0004842|GO:0016567
Vium10635g00001 651 Coils Coil 144 164 - -
Vium10635g00001 651 FunFam RING-type E3 ubiquitin transferase 350 550 - -
Vium10635g00001 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Vium10635g00001 651 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Vium10635g00001 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 453 495 IPR000225 GO:0005515
Vium10635g00001 651 Pfam Armadillo/beta-catenin-like repeat 484 522 IPR000225 GO:0005515
Vium10635g00001 651 Pfam Armadillo/beta-catenin-like repeat 402 440 IPR000225 GO:0005515
Vium10635g00001 651 SMART arm_5 401 441 IPR000225 GO:0005515
Vium10635g00001 651 SMART arm_5 524 564 IPR000225 GO:0005515
Vium10635g00001 651 SMART arm_5 483 523 IPR000225 GO:0005515
Vium10635g00001 651 SMART arm_5 565 605 IPR000225 GO:0005515
Vium10635g00001 651 SMART arm_5 442 482 IPR000225 GO:0005515
Vium10635g00001 651 Gene3D - 354 447 IPR011989 -
Vium10635g00001 651 Gene3D - 551 650 IPR011989 -
Vium10635g00001 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515
Vium10635g00001 651 FunFam RING-type E3 ubiquitin transferase 551 650 - -
Vium10635g00001 651 SUPERFAMILY ARM repeat 371 645 IPR016024 -
Vium10635g00001 651 PANTHER U BOX DOMAIN-CONTAINING 38 647 - -
Vium10635g00001 651 Coils Coil 631 651 - -
Vium10635g00001 651 Gene3D - 448 550 IPR011989 -
Vium10635g00001 651 FunFam RING-type E3 ubiquitin transferase 271 346 - -
Vium10635g00001 651 CDD RING-Ubox_PUB 273 325 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10635g00001 Vium-Chr10635 8657 12042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10635g00001 13 650 U-box Gene Family AT1G23030 61.562 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10635g00001 - - gmx:100815448 1087.4