Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10625g00001 ATGGCTTTGGAGGCTTTGAATTCTCCAACAGCGCCCGCCGCTCCCTTCCGTGCCTATCAAGAAGAGGAGGAGCTTGACCTTCAGTTCCGCGAGCCTTGGTCTAAAAGGAAGCGATCGAAACGACCCCGTTTTGAGACCGAGGAAGAGTATCTCGCTCTTTGCCTCATCATGCTCGCGCAGGGCGGCAACAACACCAACACTTCCTCCCACCGCCAAACTCAACACTCGGAGTCTCAGAAAGAACCGTCACCGCCGCTCAAGTTATCCCACAGGTGCACCGTTTGCAACAAGGCTTTTCCTTCTTATCAAGCGCTCGGTGGACACAAGGCCAGCCACCGCAAGTCCTCGTCGGAATCTACCTCTGTCTCCGCCGTCGCCAGCGACAGCGTCACCGCTNATATTTCTTCCTCATCTACCTCTCTCACACACACTCCTATAACTCTCTGCTATCTCGGACTACACACACCTAACCAAAAACTACCTCCAATCATCGTATTTCAATTTAGGGTTCCTTCATTAATGGCTTTGGAGGCTTTGAATTCTCCAACAGCGCCCGCCGCTCCCTTCCGTGCCTATCAAGAAGAGGAGGAGCTTGACCTTCAGTTCCGCGAGCCTTGGTCTAAAAGGAAGCGATCGAAACGACCCCGTTTTGAGACCGAGGAAGAGTATCTCGCTCTTTGCCTCATCATGCTCGCGCAGGGCGGCAACAACACCAACACTTCCTCCCACCGCCAAACTCAACACTCGGAGTCTCAGAAAGAACCGTCACCGCCGCTCAAGTTATCCCACAGGTGCACCGTTTGCAACAAGGCTTTTCCTTCTTATCAAGCGCTCGGTGGACACAAGGCCAGCCACCGCAAGTCCTCGTCGGAATCTACCTCTGTCTCCGCCGTCGCCAGCGACAGCGTCACCGCTTCCACCGCCGGCGGCGGAAGGATGCACGAGTGTTCCATCTGTCACAAGAGTTTCCCCACCGGACAGGCCCTGGGTGGCCACAAGCGCTGCCACTACGACGGTGGAAACCACCACAGTAACAGCAACGCCCTCACTTCCTCCTCCGACGGCGTTGGCGGCGTTGCTGCCTCCTCCCACACGCTCCGTGGGATCGACCTGAACCTTCCGGCGCCGCTCACGGAATTCTGGCCGCCGGTGGGGTTCGACTTCAGGAAGAAAGTCGGCGGAGGCGACGAGCAAGAGGTGGAAAGCCCGTTGCCAATAACCGCAGCCAAGAAGGCGCGTTTGTTTTCGGGGGACGACCACGACGGTGATGATCAAAAGGCGTAG 1284 0.5678 MALEALNSPTAPAAPFRAYQEEEELDLQFREPWSKRKRSKRPRFETEEEYLALCLIMLAQGGNNTNTSSHRQTQHSESQKEPSPPLKLSHRCTVCNKAFPSYQALGGHKASHRKSSSESTSVSAVASDSVTAXISSSSTSLTHTPITLCYLGLHTPNQKLPPIIVFQFRVPSLMALEALNSPTAPAAPFRAYQEEEELDLQFREPWSKRKRSKRPRFETEEEYLALCLIMLAQGGNNTNTSSHRQTQHSESQKEPSPPLKLSHRCTVCNKAFPSYQALGGHKASHRKSSSESTSVSAVASDSVTASTAGGGRMHECSICHKSFPTGQALGGHKRCHYDGGNHHSNSNALTSSSDGVGGVAASSHTLRGIDLNLPAPLTEFWPPVGFDFRKKVGGGDEQEVESPLPITAAKKARLFSGDDHDGDDQKA 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10625g00001 427 SUPERFAMILY beta-beta-alpha zinc fingers 263 336 IPR036236 -
Vium10625g00001 427 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 36 132 IPR044653 GO:0003700
Vium10625g00001 427 MobiDBLite consensus disorder prediction 391 427 - -
Vium10625g00001 427 MobiDBLite consensus disorder prediction 62 88 - -
Vium10625g00001 427 ProSitePatterns Zinc finger C2H2 type domain signature. 265 285 IPR013087 -
Vium10625g00001 427 Gene3D Classic Zinc Finger 261 336 - -
Vium10625g00001 427 MobiDBLite consensus disorder prediction 62 83 - -
Vium10625g00001 427 Pfam C2H2-type zinc finger 90 114 - -
Vium10625g00001 427 Pfam C2H2-type zinc finger 314 338 - -
Vium10625g00001 427 Pfam C2H2-type zinc finger 263 287 - -
Vium10625g00001 427 MobiDBLite consensus disorder prediction 413 427 - -
Vium10625g00001 427 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Vium10625g00001 427 SMART c2h2final6 314 336 IPR013087 -
Vium10625g00001 427 SMART c2h2final6 263 285 IPR013087 -
Vium10625g00001 427 SMART c2h2final6 90 112 IPR013087 -
Vium10625g00001 427 MobiDBLite consensus disorder prediction 235 261 - -
Vium10625g00001 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 314 336 IPR013087 -
Vium10625g00001 427 ProSitePatterns Zinc finger C2H2 type domain signature. 316 336 IPR013087 -
Vium10625g00001 427 MobiDBLite consensus disorder prediction 235 256 - -
Vium10625g00001 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Vium10625g00001 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 290 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10625g00001 Vium-Chr10625 3543 8386 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10625g00001 174 414 C2H2 Transcription Factor Family AT1G27730 43.701 1.29e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium10625g00001 zf-C2H2_6 2.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10625g00001 - - vum:124819975 756.518