Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10609g00002 ATGGGTAGGGGAAAGGTCGAGCTGAAGAGGATTGAGAACAAGATAAACCGTCAAGTGACATTTGCAAAGAGGAGGAATGGGTTGCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCCTAGGTACCCAAACCCCATCAACCTTTTTCTTTCTGTCACTCAGATTTTCTGCTTTTCTTCAACTTCTCGGGCTGTTTTCTTTTCTGGGGTTCTTGATTTTCCCTCCCTGCTTTCATGGGCTGCTTAA 309 0.466 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGPRYPNPINLFLSVTQIFCFSSTSRAVFFSGVLDFPSLLSWAA 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10609g00002 102 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium10609g00002 102 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium10609g00002 102 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium10609g00002 102 CDD MADS_MEF2_like 2 59 IPR033896 GO:0000977|GO:0045944
Vium10609g00002 102 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium10609g00002 102 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium10609g00002 102 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Vium10609g00002 102 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium10609g00002 102 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
Vium10609g00002 102 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium10609g00002 102 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10609g00002 Vium-Chr10609 20337 21023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10609g00002 1 61 MADS-box Gene Family AT2G03710 95.082 1.07e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium10609g00002 SRF-TF 5.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10609g00002 K09264 - csin:114262951 124.02