Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10609g00001 ATGGGTAGGGGAAAGGTCGAGCTGAAGAGGATTGAGAACAAGATAAACCGTCAAGTGACATTTGCAAAGAGGAGGAATGGGTTGCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCCTAGCATGGCGAAGACACTGGAACGGTATCACAGATGCAGCTATGGAGCCTTGGAATTACACCACCAACCTGAAATAGAGACACAGAGGCGCTACCAAGAGTACCTGAAGCTAAAATCCAAAGTGGAGGCATTACAGCAAACACAAAGAAACCTGCTTGGTGAAGAATTGGAGCACTTAGATGTTAAGGAGCTTGAACAGCTTGAACGTCAGCTTGACTCTTCCCTCAAGCAGATCAGGTCAAACAAGACACAGCAGATGCTTGATCAACTCTCTGATTTGCATAGAAAGGAAGAGATGCTGCTGGAAACTAACAATATCCTGAGGAACAAGTTGGAGGAAATCAATGTAGCCCTTCACACATGGGAAGCTAGGGAGCAAACTGCACCCTACGATGGCCACCCTCACCCATCAGATGGATACTATGACACAACACATTGCAACAGTACATTGAGAATCGGCTATGATTCTTCAGGGTTAAATGAAGCAGGAGGAGCTGCAGGAACTCAGCCCAAAATGCTAGTGAGTTCATGCATGGATGGATGA 726 0.4669 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGPSMAKTLERYHRCSYGALELHHQPEIETQRRYQEYLKLKSKVEALQQTQRNLLGEELEHLDVKELEQLERQLDSSLKQIRSNKTQQMLDQLSDLHRKEEMLLETNNILRNKLEEINVALQXTWEAREQTAPYDGHPHPSDGYYDTTHCNSTLRIGYDSSGLNEAGGAAGTQPKMLVSSCMDG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10609g00001 242 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Vium10609g00001 242 Coils Coil 122 145 - -
Vium10609g00001 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium10609g00001 242 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vium10609g00001 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium10609g00001 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium10609g00001 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium10609g00001 242 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium10609g00001 242 FunFam MADS-box transcription factor 1 13 94 - -
Vium10609g00001 242 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium10609g00001 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium10609g00001 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 160 - -
Vium10609g00001 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium10609g00001 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium10609g00001 242 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10609g00001 Vium-Chr10609 1603 16451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10609g00001 1 215 MADS-box Gene Family AT5G15800 64.706 1.42e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium10609g00001 K-box 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10609g00001 K09264 - gmx:100811049 428.713