Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10607g00001 ATGGAAGAAAAACAATTGATTGTGAGATCAATATATTCCTTTGTTTTTATGTTTTTGCTTGGCTTCAAACTACTTGTTACAGAGGCTCAACCACCAAACTATGTGGGAGATGACTGCAGTTCCACCACCCCAAAATCTCTCAGCAGTGAATACAAAGACAACCTTAAAAGTGTTCTGACATGGTTATCCTCAGATGCAGCCACAAGCAAAGGCTATAACCATAACAGCTTTGGCAACAGCACCTCTGGTGCAGATGCTGCTGTGTATGGCCTCTATGATTGCCGTGGTGATGTTTCTGGATACTTTTGTCAGTTCTGTGTTTCCACTGCTGCCAGAGAAGTTCTTCAGCGCTGCCCGAACAGGGTATCTGTTATTACATGGTATGATTTCTGCATCTTAAGGTACTCAAATGAAAACTTCTTTGGTAATGTTACAGTAGACCCATCATGGAATCATACTGGATCAAAAAATGTCTCTAGTTCGGAAGAGATTCAAAAGGGTGAGGGTTTTATGAAAAGTTTGATCAGAAAAGCTACTGTGGAGACCAACCAGTTGTACTATATGGATGGCTTCAATTTGAGTTCCACTGAGAGAAGGTATGGCTTGGTTCAATGCAGTAGAGATCTCACAAGTGAAGGGTGCAGAGAGTGTTTGGAGACCATGCTAGCAAAAGTTCCCAAATGCTGTGAGCATAAGTTGGGGTGGCAAGTTTCCACTGCAAGTTGTCTCATAAAGTATGACGACTATATTTTCTACCTTCCTCCCAATCAAGCATCTTCTGTTTCTGTGCCTGATACTCAAATAGCCAAACAAAGGGGTGGTAGTAAGGCAAAACTATTGATGATTGGCTTAAGCGTGCTGGGCGCAGTAGCTTTGCTATGTTTCAGTGTTTATTGCTTCTGGTTCAGAAAAAGAACTAGAACTGGAAGAAGAACTGGTGGAGGTATCCCTGAGACCATTCGTCTATCTTCGTATCACAATGTTCAAACTGAGGAAACACTGAATCCAGACATCTCTACAATCCCATTAATCACAATTCTACAAAGTACTGATAACTTTTCAGAAGCATCTAAGCTAGGGGAAGGTGGATTTGGCCCCGTTTACAAGGGAGTTCTACCAGATGGAAGACATATTGCAGTCAAAAGACTCTCAGAATCTTCTGGTCAAGGGTCAGAAGAATTCAAGAATGAAGTAATGTTCATAGCTAAATTGCAACATCGCAACCTTGTAAGACTTTTGGCATGCTGTTTGGAGGAAAAAGAGAAGATACTTGTATATGAGTATATGACAAACGCAAGTCTCGACTTTCACCTCTTTGATGAGAGAAAGAAAAGACAGTTGGATTGGCAACTAAGATTAAGCATCATTAATGGCATAGCAAAAGGACTTTTATACCTTCACGAGGATTCTAGACTCAAAGTTATTCACAGAGATCTCAAAGCTAGTAATGTTTTATTAGATGATGAAATGAATCCTAAAATATCAGACTTTGGATTGGCAAGATCATTTGAGAAAGGCCAGAACCAAGCAAATACAAGACGAGTAATGGGCACATATGGATACATGGCTCCAGAATACGCTATGGAAGGATTGTTTTCAGTGAAATCTGATGTTTTCAGCTATGGAGTTCTTGTTCTGGAAATCATTTGTGGGAAAAAGAACAGTGGATTCTATCTATCAGAATGTGGTCAAAGTCTTACATTATATGCTTGGAAAGTTTGGTGTGAAGGAAAATGCTTGGAACTAATGGATCCAGTGTTGGAGGAAAGTTTTGTAGAGAGTGAATTTGTGAAGTGCATGCACATTGGTCTGTTGTGTGTTCAAGAAGATGCAGCCGATAGACCAACAATGTCCACTGTAGTTGTAATGCTAGCTAGTGACATGATGTCTCTTCCAAAACCTAACCAACCAGCATTTTCAGTAGGAAGAATGACATTAGATGATGCATCTACTTCAAAAAGTTCCAAGAATCTTTCCATTAATGATGTAACTGTCTCTAACATTTTTCCAAGATAA 2016 0.3983 MEEKQLIVRSIYSFVFMFLLGFKLLVTEAQPPNYVGDDCSSTTPKSLSSEYKDNLKSVLTWLSSDAATSKGYNHNSFGNSTSGADAAVYGLYDCRGDVSGYFCQFCVSTAAREVLQRCPNRVSVITWYDFCILRYSNENFFGNVTVDPSWNHTGSKNVSSSEEIQKGEGFMKSLIRKATVETNQLYYMDGFNLSSTERRYGLVQCSRDLTSEGCRECLETMLAKVPKCCEHKLGWQVSTASCLIKYDDYIFYLPPNQASSVSVPDTQIAKQRGGSKAKLLMIGLSVLGAVALLCFSVYCFWFRKRTRTGRRTGGGIPETIRLSSYHNVQTEETLNPDISTIPLITILQSTDNFSEASKLGEGGFGPVYKGVLPDGRHIAVKRLSESSGQGSEEFKNEVMFIAKLQHRNLVRLLACCLEEKEKILVYEYMTNASLDFHLFDERKKRQLDWQLRLSIINGIAKGLLYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARSFEKGQNQANTRRVMGTYGYMAPEYAMEGLFSVKSDVFSYGVLVLEIICGKKNSGFYLSECGQSLTLYAWKVWCEGKCLELMDPVLEESFVESEFVKCMHIGLLCVQEDAADRPTMSTVVVMLASDMMSLPKPNQPAFSVGRMTLDDASTSKSSKNLSINDVTVSNIFPR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10607g00001 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Vium10607g00001 671 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 47 667 - -
Vium10607g00001 671 SUPERFAMILY Protein kinase-like (PK-like) 340 655 IPR011009 -
Vium10607g00001 671 FunFam Cysteine-rich receptor-like protein kinase 10 149 251 - -
Vium10607g00001 671 FunFam Liguleless narrow1 429 632 - -
Vium10607g00001 671 Gene3D - 33 140 IPR038408 -
Vium10607g00001 671 Gene3D - 149 251 IPR038408 -
Vium10607g00001 671 FunFam Cysteine-rich receptor-like protein kinase 10 318 428 - -
Vium10607g00001 671 SMART serkin_6 353 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10607g00001 671 ProSiteProfiles Gnk2-homologous domain profile. 146 251 IPR002902 -
Vium10607g00001 671 FunFam Cysteine-rich receptor-like protein kinase 28 35 139 - -
Vium10607g00001 671 ProSiteProfiles Protein kinase domain profile. 353 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10607g00001 671 Gene3D Transferase(Phosphotransferase) domain 1 429 634 - -
Vium10607g00001 671 Gene3D Phosphorylase Kinase; domain 1 317 428 - -
Vium10607g00001 671 CDD STKc_IRAK 359 624 - -
Vium10607g00001 671 Pfam Domain of unknown function (DUF3403) 626 671 IPR021820 GO:0004674
Vium10607g00001 671 ProSiteProfiles Gnk2-homologous domain profile. 33 140 IPR002902 -
Vium10607g00001 671 Pfam Salt stress response/antifungal 39 137 IPR002902 -
Vium10607g00001 671 Pfam Salt stress response/antifungal 170 249 IPR002902 -
Vium10607g00001 671 Pfam Protein tyrosine and serine/threonine kinase 357 623 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10607g00001 Vium-Chr10607 20703 23942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10607g00001 15 671 Receptor kinase-like Gene Family AT4G05200 41.997 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium10607g00001 PK_Tyr_Ser-Thr 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10607g00001 - - gmx:100796972 1113.6