Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10597g00005 ATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAGGCTAATGTATCTACACGGGAAGCCTTGGTAATGGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTGCAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGTCCTCTTAGCAGCAAAGAGCTTGAATCTCTTGAAAGGCAGTTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGACGCAGTTCATGCTGGATCAGCTCTCTGAACTTCAGCGTAAGGAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGCAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCTGGAGTTGAAGACATGGGATATGGCAGGCATCCAGCTCAAGCTCAGGGTGACGCACTCTTTCAACCATTGGAGTGTGAGCCAACGTTACAAATTGGGTATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGTCCAAGCATGAGCAATTACATGGCAGGATGGTTACCATAG 549 0.4736 MLKTLERYQKCNYGAPEANVSTREALVMELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSELQRKEHLLSEANRSLRQRQLEGYQINPLQLNPGVEDMGYGRHPAQAQGDALFQPLECEPTLQIGYQPDPVSVVTAGPSMSNYMAGWLP 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10597g00005 182 Coils Coil 66 86 - -
Vium10597g00005 182 Coils Coil 92 112 - -
Vium10597g00005 182 ProSiteProfiles K-box domain profile. 29 120 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium10597g00005 182 Pfam K-box region 31 112 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10597g00005 Vium-Chr10597 28819 34371 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10597g00005 1 182 MADS-box Gene Family AT1G24260 66.486 2.32e-73 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10597g00005 - - gmx:100778931 347.821