Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10597g00004 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTTACCTTCGCTAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAGGCTAATGTATCTACACGGGAAGCCTTGGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTGCAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGTCCTCTTAGCAGCAAAGAGCTTGAATCTCTTGAAAGGCAGTTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGACGCAGTTCATGCTGGATCAGCTCTCTGAACTTCAGCGTAAGGAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGCAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCTGGAGTTGAAGACATGGGATATGGCAGGCATCCAGCTCAAGCTCAGGGTGACGCACTCTTTCAACCATTGGAGTGTGAGCCAACGTTACAAATTGGGTATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGTCCAAGCATGAGCAATTACATGGCAGGATGGTTACCATAG 729 0.4705 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSELQRKEHLLSEANRSLRQRQLEGYQINPLQLNPGVEDMGYGRHPAQAQGDALFQPLECEPTLQIGYQPDPVSVVTAGPSMSNYMAGWLP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10597g00004 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vium10597g00004 242 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vium10597g00004 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium10597g00004 242 Coils Coil 152 172 - -
Vium10597g00004 242 ProSiteProfiles K-box domain profile. 89 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium10597g00004 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Vium10597g00004 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium10597g00004 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Vium10597g00004 242 Pfam K-box region 91 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium10597g00004 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium10597g00004 242 Coils Coil 126 146 - -
Vium10597g00004 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium10597g00004 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium10597g00004 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium10597g00004 242 FunFam MADS-box transcription factor 7 13 98 - -
Vium10597g00004 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10597g00004 Vium-Chr10597 26455 34371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10597g00004 1 242 MADS-box Gene Family AT1G24260 74.899 1.16e-119 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium10597g00004 K-box 5.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10597g00004 - - gmx:100805078 467.233