Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10591g00001 ATGGGTAACCTAATCGGCAACCTCTGTCTCTGTTCCTCCGGTAACCGCTCCGGAAGATTCGAGAACAGAGCTTCCTTCCTTTCCAAGCAAAACCAGAACTCCCTCGGAAACTCTATTTGCTATGTGAGACCCGACACGTGTCGGTTCTCCAGCGAGGAGTTTTCTGACGATGATGACACCCTCATCACTTTCCGGTCCGTTTCCGGCGCCACAGTGAGTGCAAACACGTCGGCGACGCCTTCAACTTCGCTCGATGATTCACTTCAACACAGCACCGTTTTGGATTCCTCTGCCTCGTTTGAGAGCTCTGGCTCCTTCACTTCCACCTTGGTCCCTTTTCAGCATCAACACGTTCATCGTGGATTCTCTCTGGGAGGGTGTGCGGAAAGAGGGTTATATTGGGGTCCTCGTGATCATGTGATGAACGATGAAGGATCCATCGAGAAAGATTCTTCCGGGGTAGCAATGAACAAGGGAAAGGGAAGTAGAAGACATTGGAAAAAGGTTCTTAGTAAGATTTCCATTGGGGGAATGTCTATTTTCAAGAAAAATGATAATACTAATGCCAGAGTAAGTTGCAGTACTAGTTTGAGTGCCGAGACGAGTTTGGATGGTGTTGAGGTTGATGATAAATATTTGGATAGTGATGTGTTGATGGGGTGTGAGAATCTTCATTGGGCTCAAGGGAGAGCTGGTGAGGATCGTTTGCATATTGTGATTTGTGAGGATCATGGTTGGGTTTTTGTGGGGATTTATGACGGGTTTAATGGCCCTGATGCCACTGATTTTCTTCTCAACAATTTGTTTTATGCTGTGAATGATGAGCTCAAGGAGATGTTGTATGGTCCCAACAAGTTTGAGCTCAAGGATTCAGACTCTTTGGAGCTGAGGGAGAAGGTGTTGTTTAGGGGAAAAGGAGTGGTTTATGGTTGTTGTTCTTCAGGTGATAATAGAGAAAACTATCCAATAGAAAATGGAGAGTTAAATTTGGAATGTGTGTCAGAAGGAGTAGAGGGAATGAATGAGATAAACAGTGAAAGAGTGGATTTGAGTCACTCGGATGTGTTACAGGCTCTTTCAAAGTCACTGAGGAAGACTGAGGATGTATTCATGAGGACTGCTGAAGAGATGATTGGTCAAAACCCTGTGATGGCTATGATGGGTTCTTGTGTTTTGGTGATGTTGATGAAGGGTCAAGATCTTTATCTGATGAATGTGGGAGATAGCCGTGCTGTGTTGGCCACTCACAGTGGGGAATCTCTTCAGCTCACCGAGGAGCATAGCACTCACGTGAAAGAGGAGGTTTACAGAATCAGGAGGGAGCATCCTGATGACCCTTTAGCAGTAACCAGAGGCCGAGTGAAGGGTCGCTTGAGTGTCACAAGGGCTTTTGGGGCAGGGTTCCTTAAGCAGCCTAAGCAAAACAATGCAGTATTAGAGGCTTTCAGAGTGAGCTACATAGGGGAATCTCCATACATCACATGTTTCCCTTCACTCCAGCACCACAAGCTCAATCCAAATGACAAGTTCCTCATACTGTCTTCAGATGGACTTTACCAATACTTCACCAATGAAGAAGCAGCTGCCAAAGTAGAGTCATTCATCACCATGTTTCCTGATAGGGATCCTGCACAACTTCTCATTGAAGAAGCTCTGGGTCGAGCAGCAAAAAGGGCTGGTTTGGAGTTCCATGAGCTGCTTGATATTCCACAGGGGGAACGCCGTCATTACCATGATGACATTTCTATTGTCATAATCTCCTTAGAGGGAAAAATATGGCGTTCATTGGTGTAA 1794 0.4571 MGNLIGNLCLCSSGNRSGRFENRASFLSKQNQNSLGNSICYVRPDTCRFSSEEFSDDDDTLITFRSVSGATVSANTSATPSTSLDDSLQHSTVLDSSASFESSGSFTSTLVPFQHQHVHRGFSLGGCAERGLYWGPRDHVMNDEGSIEKDSSGVAMNKGKGSRRHWKKVLSKISIGGMSIFKKNDNTNARVSCSTSLSAETSLDGVEVDDKYLDSDVLMGCENLHWAQGRAGEDRLHIVICEDHGWVFVGIYDGFNGPDATDFLLNNLFYAVNDELKEMLYGPNKFELKDSDSLELREKVLFRGKGVVYGCCSSGDNRENYPIENGELNLECVSEGVEGMNEINSERVDLSHSDVLQALSKSLRKTEDVFMRTAEEMIGQNPVMAMMGSCVLVMLMKGQDLYLMNVGDSRAVLATHSGESLQLTEEHSTHVKEEVYRIRREHPDDPLAVTRGRVKGRLSVTRAFGAGFLKQPKQNNAVLEAFRVSYIGESPYITCFPSLQHHKLNPNDKFLILSSDGLYQYFTNEEAAAKVESFITMFPDRDPAQLLIEEALGRAAKRAGLEFHELLDIPQGERRHYHDDISIVIISLEGKIWRSLV 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10591g00001 597 Gene3D - 197 594 IPR036457 -
Vium10591g00001 597 CDD PP2Cc 231 588 IPR001932 -
Vium10591g00001 597 SMART PP2C_4 217 586 IPR001932 -
Vium10591g00001 597 SUPERFAMILY PP2C-like 230 589 IPR036457 -
Vium10591g00001 597 PANTHER PROTEIN PHOSPHATASE 2C 192 586 IPR015655 GO:0004722|GO:0006470
Vium10591g00001 597 Pfam Protein phosphatase 2C 342 554 IPR001932 -
Vium10591g00001 597 ProSiteProfiles PPM-type phosphatase domain profile. 218 588 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10591g00001 Vium-Chr10591 1284 4563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10591g00001 1 597 PP2C-type Phosphatase Gene Family AT1G07630 44.721 8.64e-170 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10591g00001 - K01102 gmx:100794388 946.036