Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10587g00003 ATGTCGGATTTGCATTTGGAAATGAAAGAGAGGCAACGTTGGAGAGCTGAAGAGGATGCTTTATTACGTTCTTATGTCAAACAGTATGGTCCTAGGGAATGGAATCTTGTTTCTCAACGCATGAACACCCCTCTCAACAGGGATGCAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGATCTCTCACCGAAGAGGAGCAGCGCCTTGTAATCCGGCTTCAAGCAAAATACGGCAACAAATGGAAGAAAATTGCAGCAGAAGTTCCAGGTAGAACTGCAAAGAGGTTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAACAAAGAGAGAAGAAGGAGCTCAATAGAATCCCTGACCCCAGTAACAATAGCAAGTACGAGCACATACTTGAGTGTTTTGCAGAAAAACTAGTCAAGGAACAGCATCCTTCACCTTCATTTGTTATGACTGCTTCTGATGGGACATTTCTGCGTACTGATACACCAGCACCTGCATCAGCCTTGCTTCCTTCTTGGCTTTCCAATTCAAGTAGTGCTGCTGCTGCTGCTGGTCCAAGTTCCCTTTCTGGGACACTCAGTCTTTCTTCTGCAACAGTGGCTGCAGCTCCATTCTCATGGTTGCAACCTGATAGGGGACCAGACATTGCTCCTTTTGCTTTGGGGAATATACCAGCTTTCAGTGAAAATATGCTGATATCTCAGATGTTGGAGCACTGCAAAGAGCTGGAAGAAGGGCACCGAGCTTTGAGTGCTCACAAGAAGGAGGCAGTTTGGAGGTTAAGCCGAGTGGAGTTGCAGTTGGAGTCAGAGAAGGCGAGCCGAAGACGGGAGAAGATGGAAGAGTTTGAAGCTAAGATTAGGGTTCTTCAAGAAGAGGAGAGAGCTGCTTTGAGCAGAATTGAAGCAGAGTATAGAGACGAGTTAGCTGCATTGAAGAGAGATGCTGAAAACAAGGAACAAAAGTTGGCAGAACAATGGGCTGCAAAGCATTTGCAGCTTACTAGGTTGCTAGAGCAGATAGGATGCAGAGCAGGGCACCTTGAACCAAATACAAGATGA 1080 0.462 MSDLHLEMKERQRWRAEEDALLRSYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKELNRIPDPSNNSKYEHILECFAEKLVKEQHPSPSFVMTASDGTFLRTDTPAPASALLPSWLSNSSSAAAAAGPSSLSGTLSLSSATVAAAPFSWLQPDRGPDIAPFALGNIPAFSENMLISQMLEHCKELEEGHRALSAHKKEAVWRLSRVELQLESEKASRRREKMEEFEAKIRVLQEEERAALSRIEAEYRDELAALKRDAENKEQKLAEQWAAKHLQLTRLLEQIGCRAGHLEPNTR 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10587g00003 359 CDD SANT 70 111 IPR001005 -
Vium10587g00003 359 FunFam MYB-related transcription factor 11 65 - -
Vium10587g00003 359 Gene3D - 11 65 - -
Vium10587g00003 359 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vium10587g00003 359 Gene3D - 69 135 - -
Vium10587g00003 359 Pfam Myb-like DNA-binding domain 14 75 - -
Vium10587g00003 359 SUPERFAMILY Homeodomain-like 11 105 IPR009057 -
Vium10587g00003 359 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 8 354 - -
Vium10587g00003 359 SMART sant 65 113 IPR001005 -
Vium10587g00003 359 SMART sant 10 62 IPR001005 -
Vium10587g00003 359 CDD SANT 13 60 IPR001005 -
Vium10587g00003 359 Coils Coil 279 332 - -
Vium10587g00003 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 60 IPR017930 -
Vium10587g00003 359 ProSiteProfiles Myb-like domain profile. 6 60 IPR001005 -
Vium10587g00003 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10587g00003 Vium-Chr10587 29240 32615 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10587g00003 8 350 MYB Transcription Factor Family AT2G37630 59.401 5.31e-139 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium10587g00003 Myb_DNA-bind_6 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10587g00003 K09422 - gmx:100101908 543.888