Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10587g00001 ATGAAGGAAAGGCAACGTTGGAAGGCCGAAGAGGATGCGTTGTTATGTGCTTATGTGAGAGAGTATGGTCCTAGGGAATGGAATCTTGTGTCTCATCGCATGAACACATCTCTCAACAGGGATGCAAAGTCATGCTTGGAAAGGTGGAAGAACTACCTCGAGCCTGGCATCAAAAAGGGGTCTCTAACCGAGGAAGAGCAGCGCCTTGTAATCCGGCTTCAAGCGAAACACGGCAACAAATGGAAGAAAATTGCTGCAGAAGTTCCAGGTAGAACTGCAAAGAGGTTAGGGAAGTGGTGGGAAGTGTTCAAAGAGAAGCAACAGAGGGAGAAACAAGAGATTAACCAAGCAATTGGCCCAGTTGACAATACCAAATATGATCATATTCTTGAGACTTTTGCTGAGAAGCTAGTGAAAGAACACCCTTCACAATCATCATACCTTATGGCTGCTTCTACTGGACCCTTTATCCACACTGATGCACCTGCAACTGCTTCTGCATCTGCATCTACATCAGCAGCAGCATTCCTTCCTCTTTGGCTTTCAAATTCTAGCACCACCAATCCCTCACCAGCAATTAGGCCACCTTCCCCTTCTGTTACCCTTAGTCTCTCCCCCTCAATAGCACCTCCTCCCCCTTGGTTGAATGTAACAACACCTCATGGTGATAACATAGTAGTGTTAGAGTTAATAGAGTGCTGTAAGGAGTTGGAAGAAGGACATCATGCTATGGTGGCGCATAGGAAGGAGGCGGCGTGGCTGTTGAGAATGGTGAAGCAGCAGTTGGAGGCAGAGAAGGCAGGCAGAAGGAGGGAAAAGATGGAGGAAATTGAAGCAAAGATTAAGGCTCTAGGGGAAGAACAGAATGCTGCTTTGGACAGGATTGAAACAGAATATAAAGAACAGATAGCAGGATTGAGGAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGTTGAGGAATGGAATGCAAAGCACATGAGGGTAGTGAAGTGTATGGAACGACAAGTAGGAGGCAGAATACCCCGAATTGATGAGCCTAATGGAAGATAA 1050 0.4638 MKERQRWKAEEDALLCAYVREYGPREWNLVSHRMNTSLNRDAKSCLERWKNYLEPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQEINQAIGPVDNTKYDHILETFAEKLVKEHPSQSSYLMAASTGPFIHTDAPATASASASTSAAAFLPLWLSNSSTTNPSPAIRPPSPSVTLSLSPSIAPPPPWLNVTTPHGDNIVVLELIECCKELEEGHHAMVAHRKEAAWLLRMVKQQLEAEKAGRRREKMEEIEAKIKALGEEQNAALDRIETEYKEQIAGLRRDAESKEQKLVEEWNAKHMRVVKCMERQVGGRIPRIDEPNGR 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10587g00001 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Vium10587g00001 349 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 338 - -
Vium10587g00001 349 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Vium10587g00001 349 CDD SANT 6 53 IPR001005 -
Vium10587g00001 349 SMART sant 3 55 IPR001005 -
Vium10587g00001 349 SMART sant 58 106 IPR001005 -
Vium10587g00001 349 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Vium10587g00001 349 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Vium10587g00001 349 Pfam Myb-like DNA-binding domain 7 68 - -
Vium10587g00001 349 Coils Coil 296 316 - -
Vium10587g00001 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Vium10587g00001 349 Coils Coil 267 294 - -
Vium10587g00001 349 CDD SANT 63 104 IPR001005 -
Vium10587g00001 349 FunFam MYB-related transcription factor 4 58 - -
Vium10587g00001 349 Gene3D - 4 58 - -
Vium10587g00001 349 Gene3D - 62 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10587g00001 Vium-Chr10587 10280 12985 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10587g00001 1 342 MYB Transcription Factor Family AT2G37630 57.724 2.70e-136 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium10587g00001 Myb_DNA-bind_6 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10587g00001 K09422 - gmx:732551 442.58