Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10585g00005 CACCTGATTTTGGGTGCCACGGATACAAGCACTGTCACTCTTACATGGGTGATATGTTTCTTGTTGAAAAATCCTCTTATATTAGAAAAGGTAAAAGAAGAGATTAGCACTCACATTGGGAAAGAGAGATTCATAAGTGAGTCAGATGTGAATAAGTTAGTATACCTTCAAGCAGTAGTGAAAGAGACACTGAGATTGTATCCACCAGGACCTCTTTCAGCACCTCGTGAATTCACAGAAGATTGCATGTTAGGTGGATATCACATAAAAAAGGGAACTCGATTAATCACAAACTTGTGGAAGATCCAAACTGATCCTAATATTTGGTTGGATCCATTGAAATTCAAACCAGAAAGGTTTATTACTACTCACAGAGATGTTGATGTTAAAGGTCAAAATTTTGAGTTGCTACCGTTTGGAAGTGGCAGAAGAATATGTCCAGGAATATCCTTTGGTCTTAACATGATTCATTTAACTCTAGCTAATTTTTTACATTCTTTTGAAATATTTAGTAAACCTAATGAAACTATTGATATGAGAGAAGCCCTTGGAATGACCAATGAAAAAGCCACTCCACTTGAGATTTTTGTTAAACCAAGTTTGTCCTCAAACTATTATGAATCCCATGTGAATGTTAAAAAAGCCTTTTAA 651 0.3548 HLILGATDTSTVTLTWVICFLLKNPLILEKVKEEISTHIGKERFISESDVNKLVYLQAVVKETLRLYPPGPLSAPREFTEDCMLGGYHIKKGTRLITNLWKIQTDPNIWLDPLKFKPERFITTHRDVDVKGQNFELLPFGSGRRICPGISFGLNMIHLTLANFLHSFEIFSKPNETIDMREALGMTNEKATPLEIFVKPSLSSNYYESHVNVKKAF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10585g00005 216 SUPERFAMILY Cytochrome P450 2 199 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium10585g00005 216 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 139 148 IPR017972 GO:0005506|GO:0016705
Vium10585g00005 216 PRINTS E-class P450 group I signature 57 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium10585g00005 216 PRINTS E-class P450 group I signature 98 122 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium10585g00005 216 PRINTS E-class P450 group I signature 136 146 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium10585g00005 216 PRINTS E-class P450 group I signature 14 40 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium10585g00005 216 PRINTS E-class P450 group I signature 146 169 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium10585g00005 216 Pfam Cytochrome P450 2 185 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium10585g00005 216 PRINTS P450 superfamily signature 137 146 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium10585g00005 216 PRINTS P450 superfamily signature 5 22 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium10585g00005 216 PRINTS P450 superfamily signature 58 69 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium10585g00005 216 PANTHER CYTOCHROME P450 82C3-RELATED 2 206 - -
Vium10585g00005 216 Gene3D Cytochrome P450 1 204 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10585g00005 Vium-Chr10585 58822 59473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10585g00005 2 206 Cytochrome P450 AT4G31940 52.913 6.07e-79 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10585g00005 - - pvu:PHAVU_004G021100g 394.815