Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10583g00002 ATGGATTCTTCAATGGCAAGTGCTGGTGGTTCTGCTGATGAAGGTTCTCAAAGCCATAACAATGGAAGGAAAACCTCCTACAAACGTCTCTCTTCTTCTCAAACATCAAGACTTGAAAGGTTCATCAAGGATTGCCCACACCCTGATGAGGCGCAACGACGTCAATTGGCTGCTGAGATTGGTCTTGAGCCAAGACAAATAAAGTTCTGGTTTCAGAATAAGAGGACCCAGATCAAGAATCAACACGAGAGAGCAGATAACACTGCTCTTCGAGTTGAGAATGATAGGATACACACAGAAAATGTTACAATGCAAGAGGCCTTGAAGAGTATGCTTTGCCCATCTTGTGGGGGACCACCGTGTCTTGAAGGAGATCGTGAACATGCTATCCATAATATGAGACTTGAAAATATGCACCTAAAGGAAGAGCATGAGAAGGTGTCTCGTCTACTTTCGAGGTACTTGGAGAGCCAGATGTTACCACCTGATCAGTTCCAACAGGGTTTTTTCCCCATCATAGGATCAAGTTCAAATGCTGCAGGACTTGGAAATCCACTGAACCAAGTGATCGGTGGAAGTTCGAGTCATGATCCAAATCTTGCTTTGCATATGATGGATGGTGGCCATAATTTATTTGCGAGTGAAGGCATAGAAAAAAACCTTATGGCTAAGGTTGCTGCTACCGCAATGGATGAGCTAGTTAGGCTTGTTCGGATTAATGAGCCCTTTTGGATTAAGTCTTCATCTCAAGATGGCAAGCTCTGTCTACTGCTTGAAAACTATCAAAAAATGTTCCTAAAGACCAAACATTTCAAAGGGCCAAACGTGCGTATTGAAGCAACAAAAGAATCAGGAATAGTGAACATTAATAGCCTTCAGCTTGTTGACATGTTTCTTGATTCGGACAAATGGGTGAATTTGTTCCCAACAATTGTCTCAAAAGCAGAAACACTGAAAGTAATCGAAAGAGGTTTGCCAGGAAACCGAAGTGGAGCCTTGCAGCTGATGTTCCAGCAAATGCATGTTCTTTCACCCTTTGTGCAACCTCGTGAATTTCAATTCCTTCGTTTCTGTCAACAAATTGAAGAAGGCCTGGTGATAGCAGATGTATCATTTGATTCCTTCCAGCAAAAACCCTCTATTTTTCAGTCTTGGAAACATCCCTCTGGATGCTTGATCCAGGAACTGCCTAATGGGTGCTCCATGGTTACTTGGGTTGAGCACATGGAAGTGGATGATAAAATCCAAACACATCCGCTGTACAAAGATATTATTGTTAAGGGCGTTGCATACGGAGCTGAAAGGTGGATTATGGAACTTCAAAGAATTTGCGAGAGATTTGCTGCCTTTTATGTTGAAAAGATACCTGATCATGACGCTGCAGGAGGTCAAACTTTCTCATATTTAACTCAAAACCCTAACACTTTGATCAATTCTCTTGAGGGAAGGCGAAGTATAATGAATTTTTCTCATCGTATGCTGAAAATCTTCTGTGAAAGTATAACCATGGCAGATGGCTTGGACTTTCCGCTTTGTGATCTGGCGAACACTAGTGGGGTTAGGGTCTCTATTCGCGAAAGCAAAATCAATGGACAGCCAAGTGGCATGATTGTTGCAGCTGCTACCTCCATTTGGCTTCCTCTCCATTATATGAAAGTTTTTGAGTTCTTCCTAGATGATAAAAACCGTGCTCAGTGGGATGTTCTTACCTGTGGAAATCAGGCACACAAGGTGGCACACATCTCAAATGGAATTCACCCTGGGAACTGTGTATCTGTTATTCGGCCATTCATCCCTAGCGAGAACAATGCACTGATTCTTCAAGAGAGTTTCACAACCCCGATGGGATCGTATGTTATATATGCGCCAACTGATGTAGCAACTATGACTGCGGCCATAATGGGAGAAAACTCTTCAATGTTACCGGTTCTTCCATCAGGTTTTGTGATCTGTCCAGATGGAGAACCAAATTCAGCTATGGCATTTGATGGTGCAGATACTGAAAGATTGGGAGGGTCATTGCTGACTGTGGCATTTCAAATACTAGCTAGTGCTGATGGACGCAATATGCCAAATAGGAAAGCTGGAGCAGCTGTCAACTCTCTTTTAACCTCAACTATTCTCAGAGTCAGGGATGCTCTCAACTGCAACAACTAG 2157 0.4288 MDSSMASAGGSADEGSQSHNNGRKTSYKRLSSSQTSRLERFIKDCPHPDEAQRRQLAAEIGLEPRQIKFWFQNKRTQIKNQHERADNTALRVENDRIHTENVTMQEALKSMLCPSCGGPPCLEGDREHAIHNMRLENMHLKEEHEKVSRLLSRYLESQMLPPDQFQQGFFPIIGSSSNAAGLGNPLNQVIGGSSSHDPNLALHMMDGGHNLFASEGIEKNLMAKVAATAMDELVRLVRINEPFWIKSSSQDGKLCLLLENYQKMFLKTKHFKGPNVRIEATKESGIVNINSLQLVDMFLDSDKWVNLFPTIVSKAETLKVIERGLPGNRSGALQLMFQQMHVLSPFVQPREFQFLRFCQQIEEGLVIADVSFDSFQQKPSIFQSWKHPSGCLIQELPNGCSMVTWVEHMEVDDKIQTHPLYKDIIVKGVAYGAERWIMELQRICERFAAFYVEKIPDHDAAGGQTFSYLTQNPNTLINSLEGRRSIMNFSHRMLKIFCESITMADGLDFPLCDLANTSGVRVSIRESKINGQPSGMIVAAATSIWLPLHYMKVFEFFLDDKNRAQWDVLTCGNQAHKVAHISNGIHPGNCVSVIRPFIPSENNALILQESFTTPMGSYVIYAPTDVATMTAAIMGENSSMLPVLPSGFVICPDGEPNSAMAFDGADTERLGGSLLTVAFQILASADGRNMPNRKAGAAVNSLLTSTILRVRDALNCNN 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10583g00002 718 Gene3D - 222 431 IPR023393 -
Vium10583g00002 718 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Vium10583g00002 718 MobiDBLite consensus disorder prediction 1 34 - -
Vium10583g00002 718 Pfam START domain 225 446 IPR002913 GO:0008289
Vium10583g00002 718 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Vium10583g00002 718 SMART START_1 224 446 IPR002913 GO:0008289
Vium10583g00002 718 Pfam Homeodomain 26 79 IPR001356 GO:0003677
Vium10583g00002 718 CDD START_ArGLABRA2_like 219 445 - -
Vium10583g00002 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 715 IPR042160 -
Vium10583g00002 718 FunFam Homeobox-leucine zipper protein HDG1 11 97 - -
Vium10583g00002 718 SUPERFAMILY Homeodomain-like 16 85 IPR009057 -
Vium10583g00002 718 Gene3D - 11 95 - -
Vium10583g00002 718 ProSiteProfiles START domain profile. 215 449 IPR002913 GO:0008289
Vium10583g00002 718 SUPERFAMILY Bet v1-like 217 448 - -
Vium10583g00002 718 SMART HOX_1 23 85 IPR001356 GO:0003677
Vium10583g00002 718 CDD homeodomain 29 82 IPR001356 GO:0003677
Vium10583g00002 718 SUPERFAMILY Bet v1-like 491 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10583g00002 Vium-Chr10583 33767 39292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10583g00002 23 715 Homeobox Transcription Factor Family AT1G73360 41.655 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium10583g00002 START 1.3e-32 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10583g00002 K09338 - gmx:100795075 1036.56