Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10583g00001 ATGGATTTTGCCATGGGAGCTGCAGGTGGATCTGGAGATGATAAACACAATCACAATCACAATAAGAGCTCAAACAAAGGGAAAAAGGCCTACCATGGTCACAACTCTGATAGAACTTCTAAGCTTGAAGAAATGTTCCGGAAGTGTCCACATCCAACAAAAAGCACAAGATCTCAAATAGCAGAAGAACTGGGACTTGAGCCAAAACAAGTAAAATTTTGGTTTCAGAATAAGAGAACTCAAATAAAGACTCAAACTGAGCGAACAAATAACAGTCTCTTCCGTATTGAGAATGAAAGGATACGTAAAGATAACCTTTTGTTAAGAGAGGCATTCAAAAATATAATTTGTCCATCTTGTGGAGGTCCATCAGAGGTTGATGAAAAACGTACACACTCTCTAGAACAACTTCGTATTGAAAATGCTCGTCTTAGAGAAGAGCATGAGAGAGTGTCTAGTGCTCTTGCAAAGTACATGGATAAACCAGTGTTAGACCTAAACATGGGCTATAGTCTTATGAGGGGATCTTCATCATCGTGTGTTCCATTAACACCAGGAAGTTATCTGAGACTAATTGGTTCATTTCAACGTGAAGATACCATGTTCAACCTTGGGAACAGAATTACACAAATGGAGAAAACAATGATGTCACAAATTGCAGTGGCTGCTAAGGAAGAATTAATTAAGCTTCTGTGTACCAATGAACCCATATGGGTCAAATCTTCAAATCATCAAAGATTTGTTCTTCATCAAGAAAGCTACCAAACATTCTTTCCAAGGATTAATCACTTCAAGAATTCTCAAGCTCGTGTAGAATCATCAAAAGATTCAAGGGTTGTGAGAGTTAAGGCAATGGAATTAGTTAACATGTTTCTGAATTCGATGAGTGAAGAGCTGCATGTTCTTTCACCTTTAGTTCCATCTCGGGAAATGTTCTTCCTTCGTTATTGTGAACAGATTGAAGCACATTCATGGATTTCTTGGGTTGAACATGTGGAAGTGGATGAGAGGATTGAAACGCATCAACTATACAAAGATGTAGTTAATAACAGCATTGCTTATGGAGCAGAACGATGGCTGTTGGAACTTCAAAGAATGTGTGCAAGATTTACAAGTATTGGAGATGAAATACCTGATTATGACATCAATGGAGTGATACCTGTTATTGGAGGAAGAAAAAATATGATGAAGTTTTCTCATCAAATGGTGAAAAACTTCTATGGAATTTTAAACATTTCAAGTAAGACAGAGTACATTCAACATTTAGCTGAGGAGAATGCTAATATTATGATTCTTGCTCGGAAATACACAAACTCAAGTCAATCAAATGCCATGATTATATTCATTGCTACTACTTCTTTTCGGCTACCACTCCCCTCGGAATATGTTTTTGACTTCTTTAGAAATCCAACAAAACGAGCTAAGTGGGATGTTATGTGTTATGAGAGTCCAGTGCACGAAGTTGCACGTGTCTCGGTTGGAACTAACCCTAGCAATTGCATATCGATTATACAGCCTCTTCACCGAACGGCTAATAACATGGCCATTATTCAGGAAAGTTTTATTGATGCTTTGGGATCATACGTTGTGTATTCCCCTGTGAATATATCTGACATAAAGATGGCTGTAAATGGTAAAGATTCAGCAAGAATAATGTCAATCTTTCCATCAGGCATTGTTATATCAAAAGATGTTCAAACTATCACACATGCTTCTGCATGGAGTAGTGGAAGTGATGACACGAGAAGGCACGGTACTCTACTGACTGTGACTTTTCAAATACTGATGAATGGTCCAACAACTATGGTAGCAGAATCCAAGACTGTTGTTAACTCTCTCATGACCTCAACAATACAAAAAATAAACCATGCTTTGGTAAATGGTTCTAATTTAGAGTTTTAG 1902 0.3759 MDFAMGAAGGSGDDKHNHNHNKSSNKGKKAYHGHNSDRTSKLEEMFRKCPHPTKSTRSQIAEELGLEPKQVKFWFQNKRTQIKTQTERTNNSLFRIENERIRKDNLLLREAFKNIICPSCGGPSEVDEKRTHSLEQLRIENARLREEHERVSSALAKYMDKPVLDLNMGYSLMRGSSSSCVPLTPGSYLRLIGSFQREDTMFNLGNRITQMEKTMMSQIAVAAKEELIKLLCTNEPIWVKSSNHQRFVLHQESYQTFFPRINHFKNSQARVESSKDSRVVRVKAMELVNMFLNSMSEELHVLSPLVPSREMFFLRYCEQIEAHSWISWVEHVEVDERIETHQLYKDVVNNSIAYGAERWLLELQRMCARFTSIGDEIPDYDINGVIPVIGGRKNMMKFSHQMVKNFYGILNISSKTEYIQHLAEENANIMILARKYTNSSQSNAMIIFIATTSFRLPLPSEYVFDFFRNPTKRAKWDVMCYESPVHEVARVSVGTNPSNCISIIQPLHRTANNMAIIQESFIDALGSYVVYSPVNISDIKMAVNGKDSARIMSIFPSGIVISKDVQTITHASAWSSGSDDTRRHGTLLTVTFQILMNGPTTMVAESKTVVNSLMTSTIQKINHALVNGSNLEF 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10583g00001 633 ProSiteProfiles START domain profile. 307 372 IPR002913 GO:0008289
Vium10583g00001 633 Gene3D - 13 98 - -
Vium10583g00001 633 ProSiteProfiles START domain profile. 209 260 IPR002913 GO:0008289
Vium10583g00001 633 SUPERFAMILY Homeodomain-like 20 89 IPR009057 -
Vium10583g00001 633 SUPERFAMILY Bet v1-like 210 370 - -
Vium10583g00001 633 SMART HOX_1 26 89 IPR001356 GO:0003677
Vium10583g00001 633 CDD homeodomain 28 85 IPR001356 GO:0003677
Vium10583g00001 633 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981|GO:0006355
Vium10583g00001 633 Coils Coil 134 161 - -
Vium10583g00001 633 SUPERFAMILY Bet v1-like 392 621 - -
Vium10583g00001 633 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677
Vium10583g00001 633 Pfam Homeodomain 32 83 IPR001356 GO:0003677
Vium10583g00001 633 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 292 326 IPR042160 -
Vium10583g00001 633 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10583g00001 Vium-Chr10583 4422 9006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10583g00001 24 625 Homeobox Transcription Factor Family AT1G73360 35.949 3.11e-132 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vium10583g00001 Homeodomain 7.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10583g00001 K09338 - gmx:100794552 751.51