Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10577g00001 ATGATTATCCCGGAGAAGAACCGTAAGGAGATCTGCAAGTACCTCTTCCAAGAGGGAGTTTGCTATGCGAAGAAGGACTTCAATTTGGCGAAGCACCCTGAGATTGACGTGCCTAATCTGCAGGTGATAAAGCTGATGCAGAGTTTCAAATCTCGCGAGTACGTGAGGGAGACCTTTGCTTGGATGCATTACTACTGGTTCCTCACCAACGATGGCATAGAGTTTCTCAGAACTTATCTTAACCTTCCTTCCGAAATTGTCCCTGCCACTTTGAAGAAACAGGCCAAACCACCTGGCAGGCCCTTTGGCGGCCCATCCGGTGATCGCCCTAGGGGTCCACCACGCTTTGACGGCGAGCGTAGATTTGGTGGTGATCGTGATGGGTACCGTGGAGGTCCCCGAGGCGGTGGGGAATTTGGAGGAGACAAGGGAGGAGCTCCTGCTGATTACAGACCCACTTTTGGGGGTCCTGGCGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCGCCAACCAGTTCCAATCTTCCATAA 540 0.5278 MIIPEKNRKEICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPSGDRPRGPPRFDGERRFGGDRDGYRGGPRGGGEFGGDKGGAPADYRPTFGGPGGRPGFGRGSGGFGAPTSSNLP 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10577g00001 179 MobiDBLite consensus disorder prediction 91 179 - -
Vium10577g00001 179 Pfam Plectin/S10 domain 3 94 IPR005326 -
Vium10577g00001 179 FunFam 40S ribosomal protein S10 1 104 - -
Vium10577g00001 179 Gene3D - 1 104 IPR036388 -
Vium10577g00001 179 MobiDBLite consensus disorder prediction 112 132 - -
Vium10577g00001 179 PANTHER 40S RIBOSOMAL PROTEIN S10 1 173 IPR037447 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10577g00001 Vium-Chr10577 2896 5441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10577g00001 1 179 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 77.095 1.33e-77 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10577g00001 K02947 K09422 gmx:100500445 231.106