Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10574g00002 ATGGATGGGAACAAGGACGACGCGCTGAAATGTTTGAGAATCGGTAAAGAGGCGTTAGAAAACGGCGATCGTTCACGCGCGTTGAAGTTCGTGACGAAGGCGCGCCGCCTCGACCCCACGCTCCCCGTCGACGATCTACTGTCCACGATTGAGGCGGACACAGGGGATAAGTCTTCTGCCAAAGAGACCGCGGCGGAAGGTACCGTGCCCCCCGATCAGCCTTCTCTCCGGCGAAGGGCGGCCGCTACCTCGGCGGCCACGGCGGGGTCGTCATCCGCCTCGTCCTCTTCGGCCACGTATACCGAAGAGCAAGTTTCAATTATCAGAGAAATTAAGAGGAAGAAAAACTTTTATGAGATATTGGGAGTAGAGAAAAGTTGCACTGTTGAGGATGTGAGGAAATCTTATAGGAAACTGTCCCTTAAGGTTCATCCCGACAAGAACAAAGCCCCTGGCGCTGAGGAAGCATTCAAGGCTGTGTCAAAGGCGTTTCAGTGCCTTAGCAATGAAGAGAGTAGGAGAAAGTATGATGTTTCCGGTGAAGATGAATCGGTTTACGAGCAGCGTGCCGCGAGGCCAGCTGCTAGAGGTTATAATGGTTACTATGAGGCTGATGTTGATGCTGAGGAGATATTTAGGAACTTCTTCTTTGGAGGAATGGCTCCTGCAGCCAATTTTGGAGGATTCAGTTTTGGACCAGGTGGCTTCAACGGCTTCAATGGTCACAGGCCTGCTGAACACGCTTCTGGTGGTTTTAATGTTCGTGCTTTAATTCAGTTGTTGCCGGTGCTACTGATTTTGCTACTAAACTTTTTGCCTTCGTCGGATCCCTTGTACTCGCTGTCGAAGAGCTATCCTTATGAGCATCGTTTAACTACACCAAAGGGTGTTAACTATTATGTCAAGTCTACAAAGTTTGCTCAGGAGTATCCGCCTGAGAGCGAAGAACGAGCAACTCTTGAAGAAAGGGTGGAGAGGGATTACTTTAGCGTTCTTCGCCAGAATTGTCATTTTGAGTTGCAGCGCCGCCAATGGGGGTATATCCGGGAAACACCGCACTGCGATATGCTTCGGAAGTTTGAGTTGGCGAATTGA 1095 0.5014 MDGNKDDALKCLRIGKEALENGDRSRALKFVTKARRLDPTLPVDDLLSTIEADTGDKSSAKETAAEGTVPPDQPSLRRRAAATSAATAGSSSASSSSATYTEEQVSIIREIKRKKNFYEILGVEKSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNEESRRKYDVSGEDESVYEQRAARPAARGYNGYYEADVDAEEIFRNFFFGGMAPAANFGGFSFGPGGFNGFNGHRPAEHASGGFNVRALIQLLPVLLILLLNFLPSSDPLYSLSKSYPYEHRLTTPKGVNYYVKSTKFAQEYPPESEERATLEERVERDYFSVLRQNCHFELQRRQWGYIRETPHCDMLRKFELAN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10574g00002 364 MobiDBLite consensus disorder prediction 44 99 - -
Vium10574g00002 364 SUPERFAMILY Chaperone J-domain 112 232 IPR036869 -
Vium10574g00002 364 PRINTS DnaJ domain signature 136 151 IPR001623 -
Vium10574g00002 364 PRINTS DnaJ domain signature 118 136 IPR001623 -
Vium10574g00002 364 PRINTS DnaJ domain signature 152 172 IPR001623 -
Vium10574g00002 364 Pfam DnaJ domain 116 177 IPR001623 -
Vium10574g00002 364 CDD DnaJ 116 169 IPR001623 -
Vium10574g00002 364 FunFam Chaperone protein dnaJ 49 112 227 - -
Vium10574g00002 364 MobiDBLite consensus disorder prediction 84 99 - -
Vium10574g00002 364 Gene3D DnaJ domain 112 226 IPR036869 -
Vium10574g00002 364 ProSitePatterns Nt-dnaJ domain signature. 157 176 IPR018253 -
Vium10574g00002 364 PANTHER AT29763P-RELATED 1 359 - -
Vium10574g00002 364 ProSiteProfiles dnaJ domain profile. 116 180 IPR001623 -
Vium10574g00002 364 SMART dnaj_3 115 172 IPR001623 -
Vium10574g00002 364 Pfam Domain of unknown function (DUF1977) 273 344 IPR015399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10574g00002 Vium-Chr10574 2636 4313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10574g00002 111 177 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.845 8.88e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10574g00002 K09518 - gmx:100788812 588.186