Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10573g00003 ATGGTAGTTGCTGTTAAGAAACTCAAGCCTGAAGGGTTACAAGGTCATAAGGAGTGGTTGACTGAAGTGGACTACCTTGGGCAACTTCACCATCAGAATCTTGTTAAATTGATTGGATACTGCGTGGAGGGAGAGAACCGGCTGTTGGTCTATGAGTTTATGTCCAAAGGGAGCTTAGAGAATCATCTATTTAGAAGGGGACCACAACCTCTATCTTGGTCAGTGAGAATGAAAGTGGCCATTGGCGCTGCCAGAGGACTCTCTTTTCTTCATAATGCTCAGTCTCAAGTCATATACCGTGATTTTAAAGCATCTAATATCCTACTTGACGCTGATTTCAATCCTAAACTCTCTGATTTTGGTTTAGCAAAGGCTGGCCCTACGGGTGATAGAACTCATGTATCTACTCAAGTTATGGGAACTCAAGGATATGCAGCACCTGAATATGTTGCAACAGGTCGGCTGACGGCTAAAAGTGATGTATACAGCTTTGGAGTTGTGTTGCTTGAGTTATTGTCTGGTAGACGTGCAGTTGACAGAACAAAAGCTGGTGTGGAACAGAATCTAGTAGAGTGGACAAAACCATATTTGGGTGACAAAAGAAAACTATTTCGGATTATGGACACCAAGTTGGGAGGCCAATACCCACAAAAAGGAGCTTACATGGCTGCTACTCTTGCGCTACAATGCCTAAATCGCGAAGCCAAGGCAAGACCTCCAATGACAGAGGTTTTGGAAACTCTTGAGCAGATTGCAGCCTCAAAAACTGTATGTAGAAACAACCAATCGGAACAGAAGAGAGTCCATATTCCTGCAAGAAAGTGTAAAGTGCAAATGGGTGCCCATTGA 849 0.4358 MVVAVKKLKPEGLQGHKEWLTEVDYLGQLHHQNLVKLIGYCVEGENRLLVYEFMSKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAQSQVIYRDFKASNILLDADFNPKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRTKAGVEQNLVEWTKPYLGDKRKLFRIMDTKLGGQYPQKGAYMAATLALQCLNREAKARPPMTEVLETLEQIAASKTVCRNNQSEQKRVHIPARKCKVQMGAH 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10573g00003 282 SUPERFAMILY Protein kinase-like (PK-like) 2 248 IPR011009 -
Vium10573g00003 282 ProSitePatterns Serine/Threonine protein kinases active-site signature. 97 109 IPR008271 GO:0004672|GO:0006468
Vium10573g00003 282 ProSiteProfiles Protein kinase domain profile. 1 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10573g00003 282 CDD STKc_IRAK 2 251 - -
Vium10573g00003 282 Pfam Protein tyrosine and serine/threonine kinase 2 248 IPR001245 GO:0004672|GO:0006468
Vium10573g00003 282 PIRSF ILK 1 267 - -
Vium10573g00003 282 FunFam Probable serine/threonine-protein kinase PBL8 54 267 - -
Vium10573g00003 282 Gene3D Transferase(Phosphotransferase) domain 1 55 277 - -
Vium10573g00003 282 Gene3D Phosphorylase Kinase; domain 1 1 54 - -
Vium10573g00003 282 PANTHER OS01G0588500 PROTEIN-RELATED 2 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10573g00003 Vium-Chr10573 74262 76774 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10573g00003 1 248 Glycoside Hydrolase AT3G07070 55.777 5.48e-97 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium10573g00003 PK_Tyr_Ser-Thr 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10573g00003 - - gmx:100305401 524.628