Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10573g00002 ATGGGTAACTGTCTAGGTTCTTCGGCTAAAGTAGAAGCAGCTCACAGTTCCAGAACCCCTTCTGGAATTTCAAAGACTAGTCCTTTATCTGTTCCTTCCAACTTATCTATTCAATCATACTGTGAAGCAAGTGATGTCTCAAGTCTTCCCACACCAAGGTCCGAGGGTGAAATCTTGTCTTCCCCAAATCTTAAGGCCTTTGCCTTTAATGAGCTAAAGAATGCCACCAGAAACTTTCGCCCCGACAGTCTTCTTGGGGAAGGAGGATTTGGTTGTGTTTACAAGGGGTGGATTGATGAACACACATTTACAGCTTCAAAACCTGGATCAGGAATGGTAGTTGCTGTTAAGAAACTCAAGCCTGAAGGGTTACAAGGTCATAAGGAGTGGTTGACTGAAGTGGACTACCTTGGGCAACTTCACCATCAGAATCTTGTTAAATTGATTGGATACTGCGTGGAGGGAGAGAACCGGCTGTTGGTCTATGAGTTTATGTCCAAAGGGAGCTTAGAGAATCATCTATTTAGAAGGGGACCACAACCTCTATCTTGGTCAGTGAGAATGAAAGTGGCCATTGGCGCTGCCAGAGGACTCTCTTTTCTTCATAATGCTCAGTCTCAAGTCATATACCGTGATTTTAAAGCATCTAATATCCTACTTGACGCTGATTTCAATCCTAAACTCTCTGATTTTGGTTTAGCAAAGGCTGGCCCTACGGGTGATAGAACTCATGTATCTACTCAAGTTATGGGAACTCAAGGATATGCAGCACCTGAATATGTTGCAACAGGTCGGCTGACGGCTAAAAGTGATGTATACAGCTTTGGAGTTGTGTTGCTTGAGTTATTGTCTGGTAGACGTGCAGTTGACAGAACAAAAGCTGGTGTGGAACAGAATCTAGTAGAGTGGACAAAACCATATTTGGGTGACAAAAGAAAACTATTTCGGATTATGGACACCAAGTTGGGAGGCCAATACCCACAAAAAGGAGCTTACATGGCTGCTACTCTTGCGCTACAATGCCTAAATCGCGAAGCCAAGGCAAGACCTCCAATGACAGAGGTTTTGGAAACTCTTGAGCAGATTGCAGCCTCAAAAACTGTATGTAGAAACAACCAATCGGAACAGAAGAGAGTCCATATTCCTGCAAGAAAGTGTAAAGTGCAAATGGGTGCCCATTGA 1182 0.4374 MGNCLGSSAKVEAAHSSRTPSGISKTSPLSVPSNLSIQSYCEASDVSSLPTPRSEGEILSSPNLKAFAFNELKNATRNFRPDSLLGEGGFGCVYKGWIDEHTFTASKPGSGMVVAVKKLKPEGLQGHKEWLTEVDYLGQLHHQNLVKLIGYCVEGENRLLVYEFMSKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAQSQVIYRDFKASNILLDADFNPKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRTKAGVEQNLVEWTKPYLGDKRKLFRIMDTKLGGQYPQKGAYMAATLALQCLNREAKARPPMTEVLETLEQIAASKTVCRNNQSEQKRVHIPARKCKVQMGAH 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10573g00002 393 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524
Vium10573g00002 393 Gene3D Transferase(Phosphotransferase) domain 1 165 388 - -
Vium10573g00002 393 FunFam Probable serine/threonine-protein kinase PBL8 165 378 - -
Vium10573g00002 393 MobiDBLite consensus disorder prediction 10 30 - -
Vium10573g00002 393 Pfam Protein tyrosine and serine/threonine kinase 83 359 IPR001245 GO:0004672|GO:0006468
Vium10573g00002 393 ProSiteProfiles Protein kinase domain profile. 79 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10573g00002 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vium10573g00002 393 SUPERFAMILY Protein kinase-like (PK-like) 53 359 IPR011009 -
Vium10573g00002 393 Gene3D Phosphorylase Kinase; domain 1 55 164 - -
Vium10573g00002 393 FunFam Serine/threonine-protein kinase BIK1 46 164 - -
Vium10573g00002 393 PANTHER OS01G0588500 PROTEIN-RELATED 40 363 - -
Vium10573g00002 393 CDD STKc_IRAK 85 362 - -
Vium10573g00002 393 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10573g00002 Vium-Chr10573 73675 76774 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10573g00002 55 359 Glycoside Hydrolase AT3G07070 52.597 5.12e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium10573g00002 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10573g00002 - - gmx:100305401 727.243