Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10573g00001 ATGATGCCGCAAGATTTGAAGCAGCACCATAATGAAGAGTCCACGAAGAAGGAGCACAGTGAAGAATCTAAAAAGAAGGACCACAATGAAGAATCTAAAAAGAAGGAGCGTCACATTGTGACTTGGACTCAAGAGGAGGATGATATACTAAGGGAGCAGATTGGTATTCATGGAACTGAAAATTGGGCAATTATTGCATCTAAGTTTAAAGATAAAACGACAAGACAGTGCAGAAGAAGATGGTACACATACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCAGCCGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGTAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCCGTGAAAAACCGTTTCTCCACACTCTGCAGAAAGAAAGAAAAATATGCAGCATTAGCAAAAGAGAACAGTACTTCTTACATCAATTCAAATAGCAAGAGAATTATGTTCCAACATTATAATAATATGGATACAACAGCTGAATCTGGAGTACCTATTAAAAGGATGAGGAGGTCCCATATCCCTGATGATGCAGAAAAAACCGAATTTGGAGACCGATCACATTTACGAAATGGAACTCCAATAAATCAACAGCAAAGACCACCATTTGCAGTATTAGCTCAAAACTCTCATAACTCAAACAGCTTGCCAGACCATCAGCATGATTGCAGTCCCAAGTTCAATTCTGCCCAGGATGACCAGATTCAAGGAACATTTCTCAAAAGGGATGACCCAAAGAGAAGTGTATTGATGAAACAGGCAGAGTTATTAAGTTCACTAGCTCTAAAAGTTGATACCGAAAACGTGGACCAAAGTCTTGAACACACTTGGAAGGTTCTTCAAGAGTTTCTGAACCGAAACAAAGAATCAAACATTCCTGGTCACAAGATTTCAGATTTACGGCTTGTAGATAAAGATATCAATGAGGACTTGAAAAGCAGTAATGAGGAAGGCCAGGCTTGTTGGAGGCAAGTGGAACAATACGAAGATTCTCCAGCCAGTTCCGGATACAGTACAGAATCAACTTTCCTGGGTCAGTCAGCCGTTGATAAATCAGAGCACACATTGCATCAAGATATTGGAACTGAAATGAAGTCTGAACAGGTTGGAGATGAAAAAGGAGTAGACAAAGATGATAAAGGGGTTCTTTGTACTGCAAATGTAGATCAAGATGTACTGCCATATTGTGAGGAACAGATAAACAATGATGGAATTGTTTCTACCTCATCAAGATTGGAGTTCAACTCCCCTATTCAAGTAACCCCTCTGTTCAGATCCTTGGCAGCAGGAATTCCCAGCCCACAGTTTTCAGAAAGTGAAAGGAACTTCCTAAGGAAAACACTAGGAGTGGAATCTCCATCCATCAACCCAAGTGCTGACTCATCTCAACCACCACCCTGCAAAAGAGCCCTACTACCAAGTCTATGA 1467 0.4063 MMPQDLKQHHNEESTKKEHSEESKKKDHNEESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSAEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKKEKYAALAKENSTSYINSNSKRIMFQHYNNMDTTAESGVPIKRMRRSHIPDDAEKTEFGDRSHLRNGTPINQQQRPPFAVLAQNSHNSNSLPDHQHDCSPKFNSAQDDQIQGTFLKRDDPKRSVLMKQAELLSSLALKVDTENVDQSLEHTWKVLQEFLNRNKESNIPGHKISDLRLVDKDINEDLKSSNEEGQACWRQVEQYEDSPASSGYSTESTFLGQSAVDKSEHTLHQDIGTEMKSEQVGDEKGVDKDDKGVLCTANVDQDVLPYCEEQINNDGIVSTSSRLEFNSPIQVTPLFRSLAAGIPSPQFSESERNFLRKTLGVESPSINPSADSSQPPPCKRALLPSL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10573g00001 488 MobiDBLite consensus disorder prediction 1 37 - -
Vium10573g00001 488 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 89 IPR017930 -
Vium10573g00001 488 ProSiteProfiles Myb-like domain profile. 42 85 IPR001005 -
Vium10573g00001 488 MobiDBLite consensus disorder prediction 191 213 - -
Vium10573g00001 488 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 140 IPR017930 -
Vium10573g00001 488 Gene3D - 93 163 - -
Vium10573g00001 488 Pfam Myb-like DNA-binding domain 42 102 - -
Vium10573g00001 488 SMART sant 90 138 IPR001005 -
Vium10573g00001 488 SMART sant 38 87 IPR001005 -
Vium10573g00001 488 Gene3D - 29 90 - -
Vium10573g00001 488 CDD SANT 41 85 IPR001005 -
Vium10573g00001 488 MobiDBLite consensus disorder prediction 463 488 - -
Vium10573g00001 488 FunFam Transcription factor MYB124 34 90 - -
Vium10573g00001 488 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Vium10573g00001 488 PANTHER MYB PROTEIN-RELATED 41 221 - -
Vium10573g00001 488 SUPERFAMILY Homeodomain-like 38 132 IPR009057 -
Vium10573g00001 488 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10573g00001 Vium-Chr10573 59281 65196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10573g00001 28 336 MYB Transcription Factor Family AT2G02820 58.599 6.07e-127 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium10573g00001 Myb_DNA-bind_6 1.5e-14 CL0123