Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10568g00001 TCGTTTCAATCACTGAATGCAAATGCTGATGGGGCCACTGTCTCATGCAAGGATCAAACTGCTGCTTCTAGTTTCAATATTAGAGATATTGCATATTCAATTCACTGCTACACCATCGATATAATGGGAATCGAATCGGTGTATGTGTTGGCTGTCCCAAAAGAAGGACATGCAATCATTGATCGGAATTACAAGGAAAAGGGCTTGATAGTGTTTGTGGCAACAATGGTGACTATATTCATAGCTTTCTTCAGTTTCCTATACGTAAACTGCAGAGCCTTTAGGCGAGAAATGCATTTGTGTGCCTCACTGATCAAACAGTGTGAAGCCACCCAACAGGCCGAGAAAAAGAATATGAACAAGAGCACCGCTTTTGCGAGTGCCAGCCATGATGTTCGTGCTTCTCTCGCAGGGATCACCGGTTTGATAGAGATATCTTCAGAATTGGTTGCCCCCGGTTCCGAATTGGAGACCAATCTCAAACAAATGAATGGTTGTACCCAAGACTTACTAGGACTGTTGAATTCTATACTAGACACAAGCAAAATTGAGGCAGGAAAAATGCAACTCGAAGAAGAGGAGTTTGATGTGTTCAATCTCTTAGAAGATGTAGTTGACTTTTACCATCCTGTGGCTGCGAAGAAAGGTGTGGATCTGGTGTTGGACCCTTGTAACGGTTCTGTAGTGGGATATTCACGGGTGAAAGGTGATAGGGGAAAACTAAAACAAGTTCTGAGTAATTTACTGAGCAATGCTGTGAAATTTACCGATGAGGGACATATAGCGGTACGCGCATGGACTCGGAAGCCAAAACTACTGCAGAACTCCACAGTCACTTTTAGCAAATTTGGTTTCAAGCAATATTTATCATGCTTATTTCGTAACAAAACCGAACCACGTAGTGACGTGGAATCCACGCGTTCAATCCAAGAAGATCCTCATTCTATGGATTTTATATTTGAAGTGGATGACACGGGAAAAGGAATTCCTAAAGAGAAATACAAGTCTGTTTTTGAGAATTACGTCCAAATCAAAGATACTGCTCTTGGCCAAGGGGGAACTGGTTTGGGACTCGGGATTGTTCAGTCGCTGGTGCGTTTGATGCATGGAGATATTGAAATTGTGGAGAAGGATACCGGTGAAAGAGGGACATGCTTCAAGTTCAATGTGGATCTCAGTGTATGTGAGAATGAGGGAGTGTCAGATGGTAGCAGAAGGGAGGGTGTTGGTTGTGGATCAGAAGACAGAATAATAGAATGTGAGGAGCAGCAGACTATGCAGGCTTCGTGTTCTGGTTCTTCTAGAATTTGTTCCATAAGTCCTAAGTTACGAATGTGCAGCTCAAGTCCAAAGCCTGAGGCTTCCCTTGTGGTTCTTTTGATTGTTGACAAAGAGCGCCAAAGGACTTCACGAAGGTTCATGGAGAGGTTAGGGATCAAAGTGAAAGTTGTGAATACAGGGAAAGGTTTGTTTTATACTCTGAGGAAGATCAACCTGAAGGCTAAGCATTCTAGTGGCCAAAATTCTCCAGCTTCTTCGGATATGAGTCAATGGTCTACACCTCAAAGTTCTCTCGACATAGCCACAAGAGTTTCTTTGAGTTCTATGGATGGAACTGAGCATATGCCTTTAGTTTTCAAGAAAACTGATGTGGGAGCTTCTCCCGGCTTCATCCTTGTTGTGATTGATGCAAATGCAGGACCCTTTTCTGAGCTTTACACGATTGTGTCCAACTTCAAGAAAGACATTCGCAACCCGTGTAAGGTTGTGTGGTTGGATAAGCCCTTTATGCGTAGAATAAACTTGAAGGCCCTTAGTCAAGATGACATCGTCACATCCAAACCATTTCATGGTACTCGTTTGTTCCAAACCATAAAGCTCCTTCCTGAATTTGGAGGTTCTTGGCAAAGCAATTCTAGTAGAGCTAAGAGGGAAATGGCCAATGAGAGAGCTACATTGAACACTTACAAGGATCCAGGTTTGTCAAAATACACGTCTCCTCTGCTGGACAGATCACACGTCAGTTCTTCAACCGACGAAAGTACATTCCAAACCGGTGAACAAATTTTGAAGGGAAAACGATCATCGAAGGCAAAAATAAGTCTTGTTCATCATGGAGAAACACAAGAGATTGGAAACTCATCAGGGTCTCAGAAACCCTTGAGGGGTAAGAAGTTTTTGGTTGCTGATGACAGTGCAATTTTGCGCAATATAGCTTCTGCCACTCTGATTTCTCTTGGTGCAACCGTGGAGCAATGTGAGAATGGTGAAGAAGCTGTGAGGTTAGTTGATGAGGGTCTACCTCGGGAGTTTCCTAATCCTCCTTACGATTATATCTTAATGGATTGTCAGATGCCAATAATGGACGGTCTTGAGGCAACAAAGTGGATACGAAAGATAGAGAAAGCTTATGGTGTTCGGATTCCTATCATTGCATTGACTGCTGGAACCAGAAAGAATAACGATAGAGAGTTGGAAATGGGACTATCATATGGATAA 2499 0.4286 SFQSLNANADGATVSCKDQTAASSFNIRDIAYSIHCYTIDIMGIESVYVLAVPKEGHAIIDRNYKEKGLIVFVATMVTIFIAFFSFLYVNCRAFRREMHLCASLIKQCEATQQAEKKNMNKSTAFASASHDVRASLAGITGLIEISSELVAPGSELETNLKQMNGCTQDLLGLLNSILDTSKIEAGKMQLEEEEFDVFNLLEDVVDFYHPVAAKKGVDLVLDPCNGSVVGYSRVKGDRGKLKQVLSNLLSNAVKFTDEGHIAVRAWTRKPKLLQNSTVTFSKFGFKQYLSCLFRNKTEPRSDVESTRSIQEDPHSMDFIFEVDDTGKGIPKEKYKSVFENYVQIKDTALGQGGTGLGLGIVQSLVRLMHGDIEIVEKDTGERGTCFKFNVDLSVCENEGVSDGSRREGVGCGSEDRIIECEEQQTMQASCSGSSRICSISPKLRMCSSSPKPEASLVVLLIVDKERQRTSRRFMERLGIKVKVVNTGKGLFYTLRKINLKAKHSSGQNSPASSDMSQWSTPQSSLDIATRVSLSSMDGTEHMPLVFKKTDVGASPGFILVVIDANAGPFSELYTIVSNFKKDIRNPCKVVWLDKPFMRRINLKALSQDDIVTSKPFHGTRLFQTIKLLPEFGGSWQSNSSRAKREMANERATLNTYKDPGLSKYTSPLLDRSHVSSSTDESTFQTGEQILKGKRSSKAKISLVHHGETQEIGNSSGSQKPLRGKKFLVADDSAILRNIASATLISLGATVEQCENGEEAVRLVDEGLPREFPNPPYDYILMDCQMPIMDGLEATKWIRKIEKAYGVRIPIIALTAGTRKNNDRELEMGLSYG 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10568g00001 832 PANTHER TWO-COMPONENT HISTIDINE KINASE 89 819 - -
Vium10568g00001 832 MobiDBLite consensus disorder prediction 671 691 - -
Vium10568g00001 832 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 109 188 IPR036097 GO:0000155|GO:0007165
Vium10568g00001 832 PRINTS Bacterial sensor protein C-terminal signature 318 332 IPR004358 GO:0016310|GO:0016772
Vium10568g00001 832 PRINTS Bacterial sensor protein C-terminal signature 352 370 IPR004358 GO:0016310|GO:0016772
Vium10568g00001 832 PRINTS Bacterial sensor protein C-terminal signature 336 346 IPR004358 GO:0016310|GO:0016772
Vium10568g00001 832 Gene3D - 107 187 - -
Vium10568g00001 832 SMART REC_2 724 831 IPR001789 GO:0000160
Vium10568g00001 832 Gene3D - 188 399 IPR036890 -
Vium10568g00001 832 Gene3D - 703 830 - -
Vium10568g00001 832 SUPERFAMILY CheY-like 720 818 IPR011006 -
Vium10568g00001 832 SMART HKATPase_4 236 394 IPR003594 -
Vium10568g00001 832 CDD HisKA 118 182 IPR003661 GO:0000155|GO:0007165
Vium10568g00001 832 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 236 393 IPR003594 -
Vium10568g00001 832 Pfam His Kinase A (phospho-acceptor) domain 121 186 IPR003661 GO:0000155|GO:0007165
Vium10568g00001 832 ProSiteProfiles Histidine kinase domain profile. 127 394 IPR005467 -
Vium10568g00001 832 SMART HisKA_10 120 186 IPR003661 GO:0000155|GO:0007165
Vium10568g00001 832 ProSiteProfiles Response regulatory domain profile. 725 832 IPR001789 GO:0000160
Vium10568g00001 832 MobiDBLite consensus disorder prediction 671 692 - -
Vium10568g00001 832 CDD REC_hyHK_CKI1_RcsC-like 726 824 - -
Vium10568g00001 832 Pfam Response regulator receiver domain 727 819 IPR001789 GO:0000160
Vium10568g00001 832 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 175 390 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10568g00001 Vium-Chr10568 51 3156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10568g00001 27 815 Histidine Kinase Gene Family AT2G47430 43.842 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium10568g00001 HATPase_c 4.2e-26 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10568g00001 - - var:108325233 1579.3