Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10563g00011 ATGGAACAAACCATGCTTGAAGCCATTCAGTTCAACGACGAAATCCAAGGCATCATAGCTCCGGCGCCGGAAACCGCCAGTTCCTTCACTGCCCTGCTCGAACTCCCGCCGACGCAGGCCGTTGAGCTCCTCCATTCGCCGGAGCGAGCCGGGAAACCACCGCGCCATAATCCAAAACCCTATCCGTTGACGTCATTTGCCTCCGCCTCCGCTTCGTCTGCCAACCTGACCTTCCCGTCAAACGCCGCCCTGATTGAACGCGCCGCCAGGCTCTCCGTCTTCGCCGGAGAGAATTCTAACTCGAACTCCAACTCGAACTCGACGGAGATAAAGCGAGAGCTGCCGGAGACCGATTCCAACCCGAGTTCAACTCAGGGCGGCGGCTCCGCCTCCGATCCCGCCCTGGAGAACAAGGACGAGAAGGGCCTGAAGAGGAAGGAGCGAGAGAAGAAGGTGAAGGCATCTTCGAAGAAGAGCAAGAGTGTCGTCCCAGACGATAGTTCCTGCGACGGCCAGAAACTTCCGTACGTTCACGTCCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTGCAAGAGCTGGTCCCGGGTTGCAATAAGATATCAGGCACAGCATTGGTTCTGGATAAAATCATCAACCATGTGCAATCTCTACAACATGAAGTGGAGATATTATCGATGAAACTGGCAGCAGTGAACCCAGTAATTGATTTCAACCTTGACAGCTTATTGGCTACCGAAGGAGTCTCTCCAATGGACTGTAACTTCCCTCCCACAGTTGCACCCGTCGTCTGGCCAGAAATCCCGCAGAATGCAAACAGACAACAATATCAGCAACCGTGGCAATTCGATGCATTCCACCACCAGCCCATTTGGGGCAGGGAAGAAGACAACACTAATTTTATGACTCCAGAAAACTCACTCTTGAGTTATGACTCATCGGCTAATTCAGGCGCAAATGAGTTGGGAAACCATACAAGGGACAATTAA 1041 0.5255 MEQTMLEAIQFNDEIQGIIAPAPETASSFTALLELPPTQAVELLHSPERAGKPPRHNPKPYPLTSFASASASSANLTFPSNAALIERAARLSVFAGENSNSNSNSNSTEIKRELPETDSNPSSTQGGGSASDPALENKDEKGLKRKEREKKVKASSKKSKSVVPDDSSCDGQKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPVIDFNLDSLLATEGVSPMDCNFPPTVAPVVWPEIPQNANRQQYQQPWQFDAFHHQPIWGREEDNTNFMTPENSLLSYDSSANSGANELGNHTRDN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10563g00011 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 254 IPR036638 GO:0046983
Vium10563g00011 346 Gene3D - 182 253 IPR036638 GO:0046983
Vium10563g00011 346 MobiDBLite consensus disorder prediction 316 340 - -
Vium10563g00011 346 MobiDBLite consensus disorder prediction 117 131 - -
Vium10563g00011 346 Pfam Helix-loop-helix DNA-binding domain 189 236 IPR011598 GO:0046983
Vium10563g00011 346 FunFam transcription factor bHLH48-like isoform X1 182 254 - -
Vium10563g00011 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 235 IPR011598 GO:0046983
Vium10563g00011 346 MobiDBLite consensus disorder prediction 134 164 - -
Vium10563g00011 346 MobiDBLite consensus disorder prediction 43 64 - -
Vium10563g00011 346 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 81 330 IPR024097 GO:0006355
Vium10563g00011 346 SMART finulus 191 241 IPR011598 GO:0046983
Vium10563g00011 346 MobiDBLite consensus disorder prediction 313 346 - -
Vium10563g00011 346 MobiDBLite consensus disorder prediction 96 169 - -
Vium10563g00011 346 MobiDBLite consensus disorder prediction 96 110 - -
Vium10563g00011 346 CDD bHLH_AtBPE_like 175 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10563g00011 Vium-Chr10563 86231 93689 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10563g00011 6 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 50.565 4.93e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium10563g00011 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10563g00011 - - gmx:100799133 500.745