Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10563g00007 ATGGTTCAGAACGATCACATCAGCAAGGAGAGAGACCTTGAGTTTCTGCTCGACGAGAACGACGACGATGCAGAACAGCAGCAGGACATTGAAGCTGACAAGTACCAAAGTAGCAGTGAAGAAGACAGTGATGTCGAGCCTCGCTCTTTCTCTTCTCACCAATGGCCTCAGAGTTACAAAGAGACTACGGATTCTTACACAATAGCTGCTGCTCCAAATCTGGAGTCAGTTCTGCGAGGGCCGAGTTTTATATATTCTAGTTTTGACAATCGTTCAAAGAGTAGCTTAGACATTGATGGAAAGACACCTTTTCTATCTTCTGAAGGCACTAATCAATCAACTTGGTGGGAGAAAGCCTCAGTACAACGCCATTTCACTGGAGAATTACCCATTGGATATGGATGCAGCTTCACTCAGACAGTTTTCAATAGCGTTAATGTGATGGCTGGAGTTGGCCTTCTATCTACACCATACACAGTGAACCAAGCTGGGTGGATCGGCATTGCAGTGATGCTCTTTTTTGCAGTTATTTGCTGTTATACAGCAACTCTTATGAGACACTGCTTTGAAAGCAGAGAAGGAATCACTACCTACCCAGATATAGGAGAAGCTGCATTTGGAAGATATGGCCGGATTGTTGTATCGATCATTTTGTACATTGAATTATATTCATATTGTGTGGAGTTCATCACCTTGGAAGGAGACAACCTCAGTAGTCTGTTTCCTGGTACTTCCTTAAATCTGGGTATTTTCCAGTTAGACACTATGCATCTCTTTGGAGTTCTGACAGCACTTATTATTCTCCCAACTGTTTGGTTGAAGGATCTTCGCCTAATTTCTTATCTATCAGCTGGAGGAGTTGTTGCAACACTTTTGATTATTATCTGTGTGCTTTTTGTTGGGACCACAGAAGGTGTTGGATTCCATCACACTGGTCAATTGGTAAAGTGGAATGGCATTCCATTTGCTATTGGTGTCTATGGATTTTGCTTTGCAGGACATTCGGTTTTCCCAAACATTTATCAGTCCATGGCTGACAAGACACAGTTTACCAAAGCCCTCATAACATGTTTTTCTTTGTGTGTTTTGATATACGGAAGCGTTGCAATCATGGGATTTCTCATGTTTGGTGATGGCACTTTGTCTCAGATAACATTGAATATGCCACCAGGTGCTGTTGCTTCCAAAATTGCATTGTGGACAACGGTTATTAACCCATTCACTAAATATGCTCTGTTGCTGAACCCACTGGCAAGGAGTTTAGAGGAGTTGCTGCCAGAGAGAATCTCATCCACATATTGGTGTTTCATTCTTCTTAGAACAGCCCTTGTTGCATCTACAGTTTGTGTTGCTTTTCTGGTTCCCTTTTTTGGACTTGTGATGGCTTTAATTGGTTCTCTCTTCAGTTTACTTGTGTCAGCCATAATGCCAACTTTATGTTTCCTGAAAATTATTGGGAAAAAAGCTACAAAGTCACAGGTTGCACTCAGTGTTGCAATTGCTGTACTTGGAATGATTTGTGCAGTCCTTGGAACATACTCCTCTGTGTTGAGTATTGCAGACAGTTACTGA 1572 0.4192 MVQNDHISKERDLEFLLDENDDDAEQQQDIEADKYQSSSEEDSDVEPRSFSSHQWPQSYKETTDSYTIAAAPNLESVLRGPSFIYSSFDNRSKSSLDIDGKTPFLSSEGTNQSTWWEKASVQRHFTGELPIGYGCSFTQTVFNSVNVMAGVGLLSTPYTVNQAGWIGIAVMLFFAVICCYTATLMRHCFESREGITTYPDIGEAAFGRYGRIVVSIILYIELYSYCVEFITLEGDNLSSLFPGTSLNLGIFQLDTMHLFGVLTALIILPTVWLKDLRLISYLSAGGVVATLLIIICVLFVGTTEGVGFHHTGQLVKWNGIPFAIGVYGFCFAGHSVFPNIYQSMADKTQFTKALITCFSLCVLIYGSVAIMGFLMFGDGTLSQITLNMPPGAVASKIALWTTVINPFTKYALLLNPLARSLEELLPERISSTYWCFILLRTALVASTVCVAFLVPFFGLVMALIGSLFSLLVSAIMPTLCFLKIIGKKATKSQVALSVAIAVLGMICAVLGTYSSVLSIADSY 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10563g00007 523 Pfam Transmembrane amino acid transporter protein 136 516 IPR013057 -
Vium10563g00007 523 MobiDBLite consensus disorder prediction 1 15 - -
Vium10563g00007 523 PANTHER OS05G0424000 PROTEIN-RELATED 139 504 - -
Vium10563g00007 523 Gene3D Amino acid/polyamine transporter I 134 521 - -
Vium10563g00007 523 FunFam Amino acid transporter AVT1A 133 522 - -
Vium10563g00007 523 MobiDBLite consensus disorder prediction 1 57 - -
Vium10563g00007 523 MobiDBLite consensus disorder prediction 34 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10563g00007 Vium-Chr10563 52775 57109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10563g00007 17 458 Amino Acid or Auxin Permease AAAP Family AT2G41190 61.795 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10563g00007 K15015 - gmx:100790344 864.374