Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10557g00006 ATGATTATTTTGTTCATTTTCTTAAAACTTGCAGAATCAACAAACATGGCTAATTTTGAAAAAACTGGGGAGCCTAGTCCATCCGAAACACATGCAAAACATAACGAACATTCTAGGTCTGGGAAGGTTGTATCAAGGACACGAAGTGCATCAGTTTCTATTCCTGTAATCTCCATGGAGTCATATGAGAGAGAAATTAGTCTTGTGGGTCATACTGGTCGACTTCCTAGTGTAAGAATACCATCCTTAATGCATATGAGTGGGCCACTATATGTTCCCAATGGAACTGAAAATCCTTTGAAGCACACTATAGTTGTGGAAGGAAACAAAGTAGTGGAGAGCAAGACAGAAAAATTTTGTAATCTTAGTGAGAAAGATGAAAATCATTGCAATAACAACTATGATACAAAGAATGAACACTTGGTGAGGTCTAGGCTACTCGGAACATGTAATGATCCTTATTGTACTACTTGCCCAACTTACTTCAAGACCTCTATGCAAAGACTTCCAAATGATTCCACTGTGTTTGATCCCCAGTTTCACTTCCACAGTGCTCTTTATGGGGATGCCAAGGGTTTTGGTGGAAAAGTTCTCTCTTTCTGTTCTTCATGTGTTCCTGGAGTTATGAATCCTCACTCAAAAGTTGTACAACAATGGAACAAGCTTTTGGCCATTTTTTGCATGGGAGCAATTTTTGTGGATCCGTTATTTTTGTTTTTAATCTATGTACAGAAGGATGATAAATGTATAGCTATCGACTGGGATACGAGAAAAATACTTGTTTTTCTTAGAACAGTGAATGATACTGTGTATTTCTTGAACATTCTTCTCCAGTTTAGGCTGGCCTATGTTTCCCCAGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGATCATCCCAAGAAAATTGCACTTCATTACCTTAAGGGTTATTTTCTTTTTGACTTGTTTGTTGTATTTCCTCTTCCTCAGATAATGATGTTTTTTGTCCTACCAACCCGCTTGGGGGCATCAGGAGCAAACTATGCAAAGAATCTTCTGCGTGCAGCGATCCTTGTGCAGTATATTCCCAGATTATTCAGGATCCTGCCTCTGCTAATTGGACAATCTGAAACAGGATTTATATTTGAATCAGCTTGGGCAAACTTCATCATAAATCTTCTCATTTTCATGCTTGCTAGCCATATTGTTGGCTCTTGCTGGTATCTCTTCGGTCTACAGAGGGTTAATCAATGCTTGCGAGATGTCTGCGGAAAGTCTCGTATTGATAGATGCACGACAATCATTGATTGTGGAAGACGAGGTTATATCAGAAACAACTATTCCGACCAAGCATCAGCTTTATGGAACAATAACACAGACGCCATTGCTTGTTTGAATTCCTCACCCGGCGGTTTCCAATATGGGATCTATGTCAATGTTGTACCTCTTACCACGGAAACTAGTTTGATTAACAAATATATTTATTCTCTTTTTTGGGGGTTCCAGCAAATTAGTACTCTCGCTGGTAGTTTAACCCCAAGCAGGTTTTGGGGAGAAGTCCTTTTTACAATGGCCATTATAGGATTGGGACTCTTGCTTTTTGCAGTTCTGATTGGAAACATACATAACTTTCTTCAAGGTCTTGGAAGAAGAAGGCTAGAAATGCAACTCAGAGGCCGCGATGTTGAGCAATGGATGAGGCATCGTCGTTTACCAGAAGATCTAAGAAAGAAAGTACGAAGCGCTGAACGGTATAATTGGGCTGCAACAAAAGGGGTGAATGAAGAAATGATTCTTGAGAATTTGCCCGAAGATCTCCAGAGAGACATAAGACGTCATCTCTTCAAATTTGTTAAGAAAGTCCGAATTTTCACTCTGATGGATGAACCTATCTTGGATGCCGTCTGTGAGAGACTGAGACAGAAGACATACATAAAAGGAAGTTTAATTTTGACCCAAGGTTGTCTAATTGAGAAGATGATCTTTATTGTGCGCGGAAAATTGGAGAGCATTGGAGAAGACGGAGTTGGAGTTCCCTTGTCTGAAGGAGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAACATTCTTCTTCTGTAAGCACAGATGGTAAAAAAGTAAGGCTTCCAGGGCAGAGGTGGCTTAGCAACAGGACAGTAAAGTGCCTAACAAATGTGGAGGCATTTTCAATCCGAGCTGAAGATCTTGAAGAAGTCACAAGCCGGTTCATGAGATTCTTGCGGAATCTTCGGGTTCAAGGATCTCTAAGGTATGAATCACCTTACTGGCGATCATTGGCAGCAACTCGAATTCAGGTGGCATGGAGATACTGGAAGAAATGTAGAAGTAATTCTATGACCTCACAATAA 2355 0.4034 MIILFIFLKLAESTNMANFEKTGEPSPSETHAKHNEHSRSGKVVSRTRSASVSIPVISMESYEREISLVGHTGRLPSVRIPSLMHMSGPLYVPNGTENPLKHTIVVEGNKVVESKTEKFCNLSEKDENHCNNNYDTKNEHLVRSRLLGTCNDPYCTTCPTYFKTSMQRLPNDSTVFDPQFHFHSALYGDAKGFGGKVLSFCSSCVPGVMNPHSKVVQQWNKLLAIFCMGAIFVDPLFLFLIYVQKDDKCIAIDWDTRKILVFLRTVNDTVYFLNILLQFRLAYVSPESRVVGAGDLVDHPKKIALHYLKGYFLFDLFVVFPLPQIMMFFVLPTRLGASGANYAKNLLRAAILVQYIPRLFRILPLLIGQSETGFIFESAWANFIINLLIFMLASHIVGSCWYLFGLQRVNQCLRDVCGKSRIDRCTTIIDCGRRGYIRNNYSDQASALWNNNTDAIACLNSSPGGFQYGIYVNVVPLTTETSLINKYIYSLFWGFQQISTLAGSLTPSRFWGEVLFTMAIIGLGLLLFAVLIGNIHNFLQGLGRRRLEMQLRGRDVEQWMRHRRLPEDLRKKVRSAERYNWAATKGVNEEMILENLPEDLQRDIRRHLFKFVKKVRIFTLMDEPILDAVCERLRQKTYIKGSLILTQGCLIEKMIFIVRGKLESIGEDGVGVPLSEGDACGEELLTWYLEHSSSVSTDGKKVRLPGQRWLSNRTVKCLTNVEAFSIRAEDLEEVTSRFMRFLRNLRVQGSLRYESPYWRSLAATRIQVAWRYWKKCRSNSMTSQ 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10557g00006 784 ProSiteProfiles cAMP/cGMP binding motif profile. 617 695 IPR000595 -
Vium10557g00006 784 MobiDBLite consensus disorder prediction 26 43 - -
Vium10557g00006 784 CDD CAP_ED 617 745 IPR000595 -
Vium10557g00006 784 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 150 779 - -
Vium10557g00006 784 Gene3D Helix hairpin bin 544 609 - -
Vium10557g00006 784 Gene3D - 217 541 - -
Vium10557g00006 784 Gene3D Jelly Rolls 615 740 IPR014710 -
Vium10557g00006 784 SMART cnmp_10 617 750 IPR000595 -
Vium10557g00006 784 SUPERFAMILY Voltage-gated potassium channels 211 545 - -
Vium10557g00006 784 MobiDBLite consensus disorder prediction 19 47 - -
Vium10557g00006 784 SUPERFAMILY cAMP-binding domain-like 545 745 IPR018490 -
Vium10557g00006 784 Pfam Ion transport protein 221 542 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10557g00006 Vium-Chr10557 32602 40059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10557g00006 35 693 Ion Channels AT3G17700 58.006 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10557g00006 K05391 - gmx:112997782 1281.93