Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10557g00005 ATGGCTAATTTTGAAAAAACTGGGGAGCCTAGTCCATCCGAAACACATGCAAAACATAACGAACATTCTAGGTCTGGGAAGGTTGTATCAAGGACACGAAGTGCATCAGTTTCTATTCCTGTAATCTCCATGGAGTCATATGAGAGAGAAATTAGTCTTGTGGGTCATACTGGTCGACTTCCTAGTGTAAGAATACCATCCTTAATGCATATGAGTGGGCCACTATATGTTCCCAATGGAACTGAAAATCCTTTGAAGCACACTATAGTTGTGGAAGGAAACAAAGTAGTGGAGAGCAAGACAGAAAAATTTTGTAATCTTAGTGAGAAAGATGAAAATCATTGCAATAACAACTATGATACAAAGAATGAACACTTGGTGAGGTCTAGGCTACTCGGAACATGTAATGATCCTTATTGTACTACTTGCCCAACTTACTTCAAGACCTCTATGCAAAGACTTCCAAATGATTCCACTGTGTTTGATCCCCAGTTTCACTTCCACAGTGCTCTTTATGGGGATGCCAAGGGTTTTGGTGGAAAAGTTCTCTCTTTCTGTTCTTCATGTGTTCCTGGAGTTATGAATCCTCACTCAAAAGTTGTACAACAATGGAACAAGCTTTTGGCCATTTTTTGCATGGGAGCAATTTTTGTGGATCCGTTATTTTTGTTTTTAATCTATGTACAGAAGGATGATAAATGTATAGCTATCGACTGGGATACGAGAAAAATACTTGTTTTTCTTAGAACAGTGAATGATACTGTGTATTTCTTGAACATTCTTCTCCAGTTTAGGCTGGCCTATGTTTCCCCAGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGATCATCCCAAGAAAATTGCACTTCATTACCTTAAGGGTTATTTTCTTTTTGACTTGTTTGTTGTATTTCCTCTTCCTCAGATAATGATGTTTTTTGTCCTACCAACCCGCTTGGGGGCATCAGGAGCAAACTATGCAAAGAATCTTCTGCGTGCAGCGATCCTTGTGCAGTATATTCCCAGATTATTCAGGATCCTGCCTCTGCTAATTGGACAATCTGAAACAGGATTTATATTTGAATCAGCTTGGGCAAACTTCATCATAAATCTTCTCATTTTCATGCTTGCTAGCCATATTGTTGGCTCTTGCTGGTATCTCTTCGGTCTACAGAGGGTTAATCAATGCTTGCGAGATGTCTGCGGAAAGTCTCGTATTGATAGATGCACGACAATCATTGATTGTGGAAGACGAGGTTATATCAGAAACAACTATTCCGACCAAGCATCAGCTTTATGGAACAATAACACAGACGCCATTGCTTGTTTGAATTCCTCACCCGGCGGTTTCCAATATGGGATCTATGTCAATGTTGTACCTCTTACCACGGAAACTAGTTTGATTAACAAATATATTTATTCTCTTTTTTGGGGGTTCCAGCAAATTAGTACTCTCGCTGGTAGTTTAACCCCAAGCAGGTTTTGGGGAGAAGTCCTTTTTACAATGGCCATTATAGGATTGGGACTCTTGCTTTTTGCAGTTCTGATTGGAAACATACATAACTTTCTTCAAGGTCTTGGAAGAAGAAGGCTAGAAATGCAACTCAGAGGCCGCGATGTTGAGCAATGGATGAGGCATCGTCGTTTACCAGAAGATCTAAGAAAGAAAGTACGAAGCGCTGAACGGTATAATTGGGCTGCAACAAAAGGGGTGAATGAAGAAATGATTCTTGAGAATTTGCCCGAAGATCTCCAGAGAGACATAAGACGTCATCTCTTCAAATTTGTTAAGAAAGTCCGAATTTTCACTCTGATGGATGAACCTATCTTGGATGCCGTCTGTGAGAGACTGAGACAGAAGACATACATAAAAGGAAGTTTAATTTTGACCCAAGGTTGTCTAATTGAGAAGATGATCTTTATTGTGCGCGGAAAATTGGAGAGCATTGGAGAAGACGGAGTTGGAGTTCCCTTGTCTGAAGGAGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAACATTCTTCTTCTGTAAGCACAGATGGTAAAAAAGTAAGGCTTCCAGGGCAGAGGTGGCTTAGCAACAGGACAGTAAAGTGCCTAACAAATGTGGAGGCATTTTCAATCCGAGCTGAAGATCTTGAAGAAGTCACAAGCCGGTTCATGAGATTCTTGCGGAATCTTCGGGTTCAAGGATCTCTAAGGTATGAATCACCTTACTGGCGATCATTGGCAGCAACTCGAATTCAGGTGGCATGGAGATACTGGAAGAAATGTAGAAGTAATTCTATGACCTCACAATAA 2310 0.4065 MANFEKTGEPSPSETHAKHNEHSRSGKVVSRTRSASVSIPVISMESYEREISLVGHTGRLPSVRIPSLMHMSGPLYVPNGTENPLKHTIVVEGNKVVESKTEKFCNLSEKDENHCNNNYDTKNEHLVRSRLLGTCNDPYCTTCPTYFKTSMQRLPNDSTVFDPQFHFHSALYGDAKGFGGKVLSFCSSCVPGVMNPHSKVVQQWNKLLAIFCMGAIFVDPLFLFLIYVQKDDKCIAIDWDTRKILVFLRTVNDTVYFLNILLQFRLAYVSPESRVVGAGDLVDHPKKIALHYLKGYFLFDLFVVFPLPQIMMFFVLPTRLGASGANYAKNLLRAAILVQYIPRLFRILPLLIGQSETGFIFESAWANFIINLLIFMLASHIVGSCWYLFGLQRVNQCLRDVCGKSRIDRCTTIIDCGRRGYIRNNYSDQASALWNNNTDAIACLNSSPGGFQYGIYVNVVPLTTETSLINKYIYSLFWGFQQISTLAGSLTPSRFWGEVLFTMAIIGLGLLLFAVLIGNIHNFLQGLGRRRLEMQLRGRDVEQWMRHRRLPEDLRKKVRSAERYNWAATKGVNEEMILENLPEDLQRDIRRHLFKFVKKVRIFTLMDEPILDAVCERLRQKTYIKGSLILTQGCLIEKMIFIVRGKLESIGEDGVGVPLSEGDACGEELLTWYLEHSSSVSTDGKKVRLPGQRWLSNRTVKCLTNVEAFSIRAEDLEEVTSRFMRFLRNLRVQGSLRYESPYWRSLAATRIQVAWRYWKKCRSNSMTSQ 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10557g00005 769 Pfam Ion transport protein 206 527 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium10557g00005 769 Gene3D Jelly Rolls 600 725 IPR014710 -
Vium10557g00005 769 MobiDBLite consensus disorder prediction 11 28 - -
Vium10557g00005 769 ProSiteProfiles cAMP/cGMP binding motif profile. 602 680 IPR000595 -
Vium10557g00005 769 CDD CAP_ED 602 730 IPR000595 -
Vium10557g00005 769 SUPERFAMILY Voltage-gated potassium channels 196 530 - -
Vium10557g00005 769 Gene3D - 202 526 - -
Vium10557g00005 769 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 135 764 - -
Vium10557g00005 769 SUPERFAMILY cAMP-binding domain-like 530 730 IPR018490 -
Vium10557g00005 769 SMART cnmp_10 602 735 IPR000595 -
Vium10557g00005 769 MobiDBLite consensus disorder prediction 1 35 - -
Vium10557g00005 769 Gene3D Helix hairpin bin 529 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10557g00005 Vium-Chr10557 29874 40059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10557g00005 20 678 Ion Channels AT3G17700 58.006 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10557g00005 K05391 - gmx:112997782 1281.16