Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10557g00004 ATGGCTCGTTTTGAAAAAGATGAGGTTCCTATGCTGTCTGAAACGCGTGCTCAACTGTCTGATGAATTCGTGGATTCTAATTTCCGGAGGCTAGTATCTAGAACACGAAGTGCTTCAATTTCGATTCCCATGGCTTCCTTGGAATCATATGAGAAAGAAACTAGTCTTGTGGGACATACCGGTCCCCTTCGTAGTGTGAGAAAAACCCCCTTTGTGCAGATGAGTGGTCCACTGTATGCTACCCATGGAACTTCAAATCTTTCAGGACAGAATATAGCTGCTACAGGAAACAAAGTAGTGGAAAGTAAGACAGAAAACTTTTCTACTTTCAATGGCACAAATGAAAATCGTTGGGATAATGACTATGACAGAAAGAATGAACACTTAATGAGGTCTGGGCAACTGGGAATGTGTAATGATCCTTATTGTACTACTTGCCCCACTTATTTCAAGGCTGCTCAGCCAAGAACTCGAAAAACTTCAGCTATATTTGATCCCAAGTTCCACCATGTTTTTTATGGAGATGCCAAGGGTTTTGGCCGAAAATTTTTTTCCTTCTGCTATTCATATGTTCCTGGAGTTATGAATCCTCATGCAAAAGTTGTACAACAATGGAACAAGATCTTGGCCATTTTTTGCTTGGTGGCAATTTTTGTTGATCCATTATTTTTCTTCTTATTATATGTGAAGGAGGATGATAAATGTATTGCTATCAATTGGACAATGACAACAACACTTGTTTTTTTTAGAAGCATTAATGATTTGATATATTTCTTTAACATTCTTCTCCAGTTTAGGCTGGCTTATGTTTCTCCTGAGTCAATGGTAGTAGGTGCTGGAGATTTAGTTGACCAACCCAAGAAAATTGCTCTTAATTATCTGAAGAGTTATCTTTTTATCGACCTATTTGTTGTATTTCCTCTTCCTCAGGTAATGATATTATCTGTCCTACCAAACTACCTGGGATCATCTGGAGCAAATTATGCTAAAAATCTTCTGCGTGCAGCAATCCTTGTGCAGTATTTTCCCAGATTATTCAGGTTTCTGCCTCTGCTAATTGGCCAGTCTCCAACAGGATTCATTTTTGAGTCAGCCTGGGCAAATTTTATTATAAATCTTCTCATTTTTATGCTATCTGGCCATGTTGTTGGTTCTTTCTGGTACCTCTTTGGTCTACAGAGGGTTAATCAATGCTTGCGAAATGCCTGCCATGATTCTAATATTCGTGGATGCTCAACATTTATTGATTGTGGACGTTCATCTGGCCGTAAGTCAGATATATGGAGCGAAAATGTGAATGCCTCTGCATGTTTGAACGCCAGTTCCGGTGCTTTTCAATATGGAGTCTATGTAAATGCTGTAGCACTTACTACAGAAACTAGGGTGGTCAACAAATATGTATTTGCACTGTTTTGGGGCTTCCAGCAAATCAGTACTTTGGCTGGTAATCAAACCCCAAGCTATTTTGTGTGGGAAGTCCTTTTTACGATGGCCATCATAGGTTTGGGACTCTTACTTTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGCAGGAGGCTAGAAATGCAACTTAGAGGTCGTGATGTTGAACAATGGATGAGCCACCGTCGCTTGCCAGAAGATCTAAGAAGGAGAGTACGACAAGCTGAACGGTATAATTGGGCAGCAACAAGGGGTGTAAATGAAGAGACGCTTCTGGAGAATTTACCCGAAGATCTCCAGACAGACATAAGACGTCATCTCTTCGAGTTTGTTAAGAAAGTTCGCATCTTTGCCCTGATGGATGAGCCTATCTTAGATGCAATTTGCGAGAGACTAAAGCAAAAGACATACATCAAAGGAAGTAAAATTGTGACTCAGGGTGGTCTGGTAGAGAAAATGGTCTTTGTTGTTCGAGGGAAATTGGAGAGCTTTGGAGATGATGGAACTAGTGTTCCCTTATCTGAAGGGGATGCTTGTGGTGAAGAACTTCTCACATGGTATCTTGAGCATTCTTCTGTAACCACAGATGGAAAAAAAGTAAGAGTTCAAGGACAGAGGTTGCTGAGTAATAGGACTGTAAGATGCTTAACAAATGTAGAGGCATTTTCACTTCGTGCCGGAGACCTTGAGGAACTCACAATTCTTTTCACTAGATTCTTGCGGAACCCTCATGTTCAAGGAACTCTAAGGTATGTATCACCTTATTGGAGATCCCTTGCAGCAATCCGCATTCAGGTTGCATGGAGATACAGAAAGAAGCGTCTAAGTCGTGCCTATACCTCTCAATCAGATCAAACGTTCTGA 2304 0.4076 MARFEKDEVPMLSETRAQLSDEFVDSNFRRLVSRTRSASISIPMASLESYEKETSLVGHTGPLRSVRKTPFVQMSGPLYATHGTSNLSGQNIAATGNKVVESKTENFSTFNGTNENRWDNDYDRKNEHLMRSGQLGMCNDPYCTTCPTYFKAAQPRTRKTSAIFDPKFHHVFYGDAKGFGRKFFSFCYSYVPGVMNPHAKVVQQWNKILAIFCLVAIFVDPLFFFLLYVKEDDKCIAINWTMTTTLVFFRSINDLIYFFNILLQFRLAYVSPESMVVGAGDLVDQPKKIALNYLKSYLFIDLFVVFPLPQVMILSVLPNYLGSSGANYAKNLLRAAILVQYFPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSFWYLFGLQRVNQCLRNACHDSNIRGCSTFIDCGRSSGRKSDIWSENVNASACLNASSGAFQYGVYVNAVALTTETRVVNKYVFALFWGFQQISTLAGNQTPSYFVWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYNWAATRGVNEETLLENLPEDLQTDIRRHLFEFVKKVRIFALMDEPILDAICERLKQKTYIKGSKIVTQGGLVEKMVFVVRGKLESFGDDGTSVPLSEGDACGEELLTWYLEHSSVTTDGKKVRVQGQRLLSNRTVRCLTNVEAFSLRAGDLEELTILFTRFLRNPHVQGTLRYVSPYWRSLAAIRIQVAWRYRKKRLSRAYTSQSDQTF 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10557g00004 767 Gene3D - 199 521 - -
Vium10557g00004 767 ProSiteProfiles cAMP/cGMP binding motif profile. 596 664 IPR000595 -
Vium10557g00004 767 SUPERFAMILY Voltage-gated potassium channels 200 524 - -
Vium10557g00004 767 Gene3D Jelly Rolls 594 718 IPR014710 -
Vium10557g00004 767 SUPERFAMILY cAMP-binding domain-like 524 716 IPR018490 -
Vium10557g00004 767 Gene3D Helix hairpin bin 523 588 - -
Vium10557g00004 767 Pfam Ion transport protein 207 524 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium10557g00004 767 CDD CAP_ED 596 712 IPR000595 -
Vium10557g00004 767 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 138 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10557g00004 Vium-Chr10557 7701 22106 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10557g00004 5 673 Ion Channels AT3G17700 61.095 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10557g00004 K05391 - ccaj:109789004 1343.56