Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10557g00003 ATGGCTCGTTTTGAAAAAGATGAGGTTCCTATGCTGTCTGAAACGCGTGCTCAACTGTCTGATGAATTCGTGGATTCTAATTTCCGGAGGCTAGTATCTAGAACACGAAGTGCTTCAATTTCGATTCCCATGGCTTCCTTGGAATCATATGAGAAAGAAACTAGTCTTGTGGGACATACCGGTCCCCTTCGTAGTGTGAGAAAAACCCCCTTTGTGCAGATGAGTGGTCCACTGTATGCTACCCATGGAACTTCAAATCTTTCAGGACAGAATATAGCTGCTACAGGAAACAAAGTAGTGGAAAGTAAGACAGAAAACTTTTCTACTTTCAATGGCACAAATGAAAATCGTTGGGATAATGACTATGACAGAAAGAATGAACACTTAATGAGGTCTGGGCAACTGGGAATGTGTAATGATCCTTATTGTACTACTTGCCCCACTTATTTCAAGGCTGCTCAGCCAAGAACTCGAAAAACTTCAGCTATATTTGATCCCAAGTTCCACCATGTTTTTTATGGAGATGCCAAGGGTTTTGGCCGAAAATTTTTTTCCTTCTGCTATTCATATGTTCCTGGAGTTATGAATCCTCATGCAAAAGTTGTACAACAATGGAACAAGATCTTGGCCATTTTTTGCTTGGTGGCAATTTTTGTTGATCCATTATTTTTCTTCTTATTATATGTGAAGGAGGATGATAAATGTATTGCTATCAATTGGACAATGACAACAACACTTGTTTTTTTTAGAAGCATTAATGATTTGATATATTTCTTTAACATTCTTCTCCAGGTAATGATATTATCTGTCCTACCAAACTACCTGGGATCATCTGGAGCAAATTATGCTAAAAATCTTCTGCGTGCAGCAATCCTTGTGCAGTATTTTCCCAGATTATTCAGGTTTCTGCCTCTGCTAATTGGCCAGTCTCCAACAGGATTCATTTTTGAGTCAGCCTGGGCAAATTTTATTATAAATCTTCTCATTTTTATGCTATCTGGCCATGTTGTTGGTTCTTTCTGGTACCTCTTTGGTCTACAGAGGGTTAATCAATGCTTGCGAAATGCCTGCCATGATTCTAATATTCGTGGATGCTCAACATTTATTGATTGTGGACGTTCATCTGGCCGTAAGTCAGATATATGGAGCGAAAATGTGAATGCCTCTGCATGTTTGAACGCCAGTTCCGGTGCTTTTCAATATGGAGTCTATGTAAATGCTGTAGCACTTACTACAGAAACTAGGGTGGTCAACAAATATGTATTTGCACTGTTTTGGGGCTTCCAGCAAATCAGTACTTTGGCTGGTAATCAAACCCCAAGCTATTTTGTGTGGGAAGTCCTTTTTACGATGGCCATCATAGGTTTGGGACTCTTACTTTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGCAGGAGGCTAGAAATGCAACTTAGAGGTCGTGATGTTGAACAATGGATGAGCCACCGTCGCTTGCCAGAAGATCTAAGAAGGAGAGTACGACAAGCTGAACGGTATAATTGGGCAGCAACAAGGGGTGTAAATGAAGAGACGCTTCTGGAGAATTTACCCGAAGATCTCCAGACAGACATAAGACGTCATCTCTTCGAGTTTGTTAAGAAAGTTCGCATCTTTGCCCTGATGGATGAGCCTATCTTAGATGCAATTTGCGAGAGACTAAAGCAAAAGACATACATCAAAGGAAGTAAAATTGTGACTCAGGGTGGTCTGGTAGAGAAAATGGTCTTTGTTGTTCGAGGGAAATTGGAGAGCTTTGGAGATGATGGAACTAGTGTTCCCTTATCTGAAGGGGATGCTTGTGGTGAAGAACTTCTCACATGGTATCTTGAGCATTCTTCTGTAACCACAGATGGAAAAAAAGTAAGAGTTCAAGGACAGAGGTTGCTGAGTAATAGGACTGTAAGATGCTTAACAAATGTAGAGGCATTTTCACTTCGTGCCGGAGACCTTGAGGAACTCACAATTCTTTTCACTAGATTCTTGCGGAACCCTCATGTTCAAGGAACTCTAAGGTATGTATCACCTTATTGGAGATCCCTTGCAGCAATCCGCATTCAGGTTGCATGGAGATACAGAAAGAAGCGTCTAAGTCGTGCCTATACCTCTCAATCAGATCAAACGTTCTGA 2166 0.4095 MARFEKDEVPMLSETRAQLSDEFVDSNFRRLVSRTRSASISIPMASLESYEKETSLVGHTGPLRSVRKTPFVQMSGPLYATHGTSNLSGQNIAATGNKVVESKTENFSTFNGTNENRWDNDYDRKNEHLMRSGQLGMCNDPYCTTCPTYFKAAQPRTRKTSAIFDPKFHHVFYGDAKGFGRKFFSFCYSYVPGVMNPHAKVVQQWNKILAIFCLVAIFVDPLFFFLLYVKEDDKCIAINWTMTTTLVFFRSINDLIYFFNILLQVMILSVLPNYLGSSGANYAKNLLRAAILVQYFPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSFWYLFGLQRVNQCLRNACHDSNIRGCSTFIDCGRSSGRKSDIWSENVNASACLNASSGAFQYGVYVNAVALTTETRVVNKYVFALFWGFQQISTLAGNQTPSYFVWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYNWAATRGVNEETLLENLPEDLQTDIRRHLFEFVKKVRIFALMDEPILDAICERLKQKTYIKGSKIVTQGGLVEKMVFVVRGKLESFGDDGTSVPLSEGDACGEELLTWYLEHSSVTTDGKKVRVQGQRLLSNRTVRCLTNVEAFSLRAGDLEELTILFTRFLRNPHVQGTLRYVSPYWRSLAAIRIQVAWRYRKKRLSRAYTSQSDQTF 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10557g00003 721 ProSiteProfiles cAMP/cGMP binding motif profile. 550 618 IPR000595 -
Vium10557g00003 721 Gene3D - 183 475 - -
Vium10557g00003 721 Gene3D Jelly Rolls 548 672 IPR014710 -
Vium10557g00003 721 SUPERFAMILY Voltage-gated potassium channels 200 478 - -
Vium10557g00003 721 Pfam Ion transport protein 207 478 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium10557g00003 721 SUPERFAMILY cAMP-binding domain-like 478 670 IPR018490 -
Vium10557g00003 721 Gene3D Helix hairpin bin 477 542 - -
Vium10557g00003 721 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 138 267 - -
Vium10557g00003 721 CDD CAP_ED 550 666 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10557g00003 Vium-Chr10557 7700 22106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10557g00003 5 627 Ion Channels AT3G17700 56.213 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10557g00003 K05391 - ccaj:109789004 1242.64