Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10535g00007 ATGCCTCCACAAGACCACCACCAGCCGCTGTTAGCGGAGGAGCAGGAAGAGACTGCGTACGATTCCGCGGACAAGGTCGTGGTGGTCGGAATCGACGAGCAGGAGGGTGACGAGGCGCTGCCGTTCTCATGGCGGAAGCTGTGGCTGTTCACGGGGCCGGGGTTTCTGATGAGCATCGCGTTTCTGGATCCCGGGAATCTGGAGGGGGATCTTCAGTCTGGTGCCATTGCTGGGTACTCCCTCTTGTGGCTCCTCATGTGGGCCACTGCTATGGGCCTCCTTATTCAGCTTCTCTCGGCCCGCCTTGGCGTCGCCACTGGGAGACACTTAGCTGAACTGTGCAGGGAAGAGTATCCTGCATGGGCTAGGATTGTGCTCTGGCTTATGACTGAAATCGCTCTTATTGGCTCTGACATTCAGGAGGTTATCGGGAGCGCTATTGCTATCAAGATTCTCAGTAATGGCGTCGTTCCCCTTTGGGCTGGGGTCGTAGTTACAGCTTTAGATTGTTTCATTTTTCTCTTTCTTGAGAACTATGGTGTGAGGAAACTGGAGGCGTTTTTCGCTGTTCTGATTGCTGTAATGGCTCTGTCGTTTGCGTGGATGTTTGGTGAAGCAAAGCCCAATGGTGTTGATGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTGGGTTGCATTATTATGCCTCACAATGTGTTTTTGCATTCTGCGCTTGTTCAATCTAGGCAGGTTGACCCCAGCAAGAAAGGCCGTGTTCAGGAAGCTCTTAATTACTACTCGATAGAGTCCACCATCGCCCTGGCGGTGTCCTTTGTGATTAATATATTTGTTACAACTGTGTTTGCCAAGGGCTTTTATGGTACTGAAATAGCAAAAAACATTGGTCTTGTAAACGCAGGTCAGTACCTTCAGGAGAAGTACGGGGGTGGACTTTTCCCCATCATGTATATATGGGGTATTGGGTTGTTAGCAGCCGGCCAGAGTAGCACAATTACTGGTACATATGCGGGACAATTTATCATGGGGGGTTTTCTGAATTTAAGGTTGAAAAAGTGGGTGAGGGCATTGATTACTCGAAGTTTTGCAATCATCCCAACAATGATAGTTGCTCTTATATTCGATACCTCGGAGGAGTCATTAGATGTTCTGAACGAATGGCTTAATGTTCTCCAATCAGTTCAAATCCCATTTGCACTCATTCCCTTGCTTTGCTTGGTGTCCAAAGAACAGATAATGGGCAGTTTCAGAATTGGCCCTGTCCTTAAGATTATTTCCTGGCTTGTGGCTGCTCTGGTGATAGTGATAAACGGCTATCTTTTGGTGGAATTCTTCTCCTCTGAAGTGAATGGAGCAGTGTTTGCAGCTATAGTGTTTGTATTAACAGCTGCATATGTTGCATTCGTACTTTACCTTATTTCACGAGCCATTACCTATACACCATGGCAACGTTTAACCGGATCTAAGACAGTTGCTACCGCAGAGAATTGA 1521 0.474 MPPQDHHQPLLAEEQEETAYDSADKVVVVGIDEQEGDEALPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCREEYPAWARIVLWLMTEIALIGSDIQEVIGSAIAIKILSNGVVPLWAGVVVTALDCFIFLFLENYGVRKLEAFFAVLIAVMALSFAWMFGEAKPNGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPSKKGRVQEALNYYSIESTIALAVSFVINIFVTTVFAKGFYGTEIAKNIGLVNAGQYLQEKYGGGLFPIMYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWVRALITRSFAIIPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGSFRIGPVLKIISWLVAALVIVINGYLLVEFFSSEVNGAVFAAIVFVLTAAYVAFVLYLISRAITYTPWQRLTGSKTVATAEN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10535g00007 506 Hamap Divalent metal cation transporter MntH [mntH]. 34 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium10535g00007 506 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium10535g00007 506 PRINTS Natural resistance-associated macrophage protein signature 365 382 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium10535g00007 506 PRINTS Natural resistance-associated macrophage protein signature 181 202 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium10535g00007 506 PRINTS Natural resistance-associated macrophage protein signature 337 356 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium10535g00007 506 PRINTS Natural resistance-associated macrophage protein signature 230 253 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium10535g00007 506 PRINTS Natural resistance-associated macrophage protein signature 156 175 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium10535g00007 506 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium10535g00007 506 Pfam Natural resistance-associated macrophage protein 68 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium10535g00007 506 NCBIfam Nramp family divalent metal transporter 52 421 - -
Vium10535g00007 506 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 45 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium10535g00007 506 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 38 484 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10535g00007 Vium-Chr10535 62729 66359 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10535g00007 1 492 Inorganic Solute Cotransporters AT2G23150 77.046 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10535g00007 K21398 - gmx:100807811 934.095