Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10525g00002 ATGGAGGTTGTTGTGCAGGGATCGGAGGGTGAGGACTCAGACCCTAACGCGCCTTCCTCGGGGAACAGTCCAAGCAGCAACAATGAGCAGAAGAAAACCTGCGCCGATTGCGGCACCACTAAGACTCCACTCTGGAGGGGAGGTCCGGCAGGGCCTAAGTCTCTGTGCAACGCCTGCGGGATCAGAAGCAGGAAGAAGAAGAGAGCGATTATGGGGATAAGCAAGGGGAACAACGAGGATGGGAGAAAGGGGAAGAAGAGTGGCGGCGCCGGGGCCGCCGCTATCGGTGGTGGCGCGTTGGGGAGGGAGGTATTGTTGCATCGATCACGTTGGAATAGTGGAGGCCTTGTTGGAGTAGTCGTTGATAGAGGCATTGACCGGAGTTAG 387 0.5762 MEVVVQGSEGEDSDPNAPSSGNSPSSNNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAIMGISKGNNEDGRKGKKSGGAGAAAIGGGALGREVLLHRSRWNSGGLVGVVVDRGIDRS 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10525g00002 128 Gene3D - 28 89 IPR013088 GO:0006355|GO:0008270
Vium10525g00002 128 ProSitePatterns GATA-type zinc finger domain. 34 59 IPR000679 GO:0006355|GO:0043565
Vium10525g00002 128 MobiDBLite consensus disorder prediction 1 49 - -
Vium10525g00002 128 Pfam GATA zinc finger 34 68 IPR000679 GO:0006355|GO:0043565
Vium10525g00002 128 PANTHER OS01G0976800 PROTEIN 14 85 - -
Vium10525g00002 128 CDD ZnF_GATA 33 68 IPR000679 GO:0006355|GO:0043565
Vium10525g00002 128 MobiDBLite consensus disorder prediction 12 37 - -
Vium10525g00002 128 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 28 68 - -
Vium10525g00002 128 ProSiteProfiles GATA-type zinc finger domain profile. 28 64 IPR000679 GO:0006355|GO:0043565
Vium10525g00002 128 SMART GATA_3 28 81 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10525g00002 Vium-Chr10525 32785 33297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10525g00002 25 105 C2C2-Gata Transcription Factor Family AT5G49300 56.790 8.40e-25 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium10525g00002 GATA 5.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10525g00002 - - vum:124819855 218.394