Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10515g00001 ATGGCCGGGGTTTCTCTCAAGTGCGGTGACTGCGGTGCTCTGTTGAGAACGGTAGAAGAAGCCCAAGAACACGCCGAACTCACTTCCCATTCCAACTTCTCCGAATCCACAGAAGCTGTTCTCAACCTCGTTTGCACCACTTGCTCCAAACCCTGCAGATCCAAAACTGAGAGTGATCTGCACACCAAAAGAACGGGTCACACTGAGTTTGTTGACAGGACTTCCGATACCGTGAAACCGATTAGTTTGGAGGTACCGAAGGTGGATGCGTTGGAAAACCCTTCCAGCACCGCATCAACTGATCAAAATGAAGAAATGGTTGTTCCTGAAGTGGACAAAAAACTGCTTGAAGAACTCGAATCAATGGGTTTTTCAACGGCACGGGCTACGCGCGCGCTTCATTACTCTGGTAATGCTGGCCTTGAGGCGGCTGTAAACTGGATAGTAGAGCATGAGAATGATCATGACATAGATCAGATGCCCTTGGTACCTGCCAACACCAAAATTGAAGCTTCTAAACCTTCTCTTACCCCAGAAGAACTGAAGGCCAAACAACAGGAACTAAGGGAGAGAGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAGAACAGAGAGAGAAAAAGAAAAGGAGAGAATTCGCATTGGCAAGGAGTTGCTGGAAGCAAAGAGGATTGAGGAAGAAAATGAGAGGAAACGGTTGTTGGCCTTGAGAAAAGCAGAGAAAGAGGAAGAGAAAAGGGCTAGGGAGAAAATCAAGCAAAAGTTGGAAGAAGACAAGGCAGAAAGAAGGCGGAGGCTTGGATTGCCGCCAGAGGAACCTTCAGCAGCCAAATCTTCAGCTGCACCTGTTGTGGAGGAGAAAAAGAGTTTTGTGCCTGTTAGGCCTGCCACAAAAGCTGAGCAAATGAGAGAGTGCCTCCGTTCTCTCAAGCAGAACCACAAGGAGAATGAGTCCAGAGTAAAGAAAGCATTCCAAACTCTTCTAACTTATGTAGGGAATGTTGCCAGAAATCCCGATGAGGAAAAATTCAGAAAGATACGTCTTAGTAACCAATCTTTTCAGGACAGAGTTGGTTCCTTGAAAGGGGGCATTGAATTTCTAGAAATTTGCGGGTTTGAGAAGATGGATGGTGGCGAGTTCTTGTTTTTGCCTAGGGACAAAGTTGAGATGGCGATCCTGAACACAGCCGGATCTGAACTAGACTCTGCAATTAAGAATCCCTTTTTTGGAGTTCTTTAG 1239 0.4641 MAGVSLKCGDCGALLRTVEEAQEHAELTSHSNFSESTEAVLNLVCTTCSKPCRSKTESDLHTKRTGHTEFVDRTSDTVKPISLEVPKVDALENPSSTASTDQNEEMVVPEVDKKLLEELESMGFSTARATRALHYSGNAGLEAAVNWIVEHENDHDIDQMPLVPANTKIEASKPSLTPEELKAKQQELRERARKKKEEEEKRTEREKEKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEEKRAREKIKQKLEEDKAERRRRLGLPPEEPSAAKSSAAPVVEEKKSFVPVRPATKAEQMRECLRSLKQNHKENESRVKKAFQTLLTYVGNVARNPDEEKFRKIRLSNQSFQDRVGSLKGGIEFLEICGFEKMDGGEFLFLPRDKVEMAILNTAGSELDSAIKNPFFGVL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10515g00001 412 Coils Coil 181 213 - -
Vium10515g00001 412 Gene3D - 112 158 - -
Vium10515g00001 412 SMART PGNneu 322 385 - -
Vium10515g00001 412 MobiDBLite consensus disorder prediction 239 288 - -
Vium10515g00001 412 MobiDBLite consensus disorder prediction 169 210 - -
Vium10515g00001 412 MobiDBLite consensus disorder prediction 175 210 - -
Vium10515g00001 412 Coils Coil 296 319 - -
Vium10515g00001 412 Pfam PUB domain 319 389 IPR018997 -
Vium10515g00001 412 Coils Coil 216 261 - -
Vium10515g00001 412 SUPERFAMILY UBA-like 100 164 IPR009060 GO:0005515
Vium10515g00001 412 CDD PUB_UBA_plant 306 412 - -
Vium10515g00001 412 Pfam UBA/TS-N domain 116 148 IPR015940 -
Vium10515g00001 412 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Vium10515g00001 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Vium10515g00001 412 PANTHER F13M7.16 PROTEIN 1 412 - -
Vium10515g00001 412 CDD UBA_PUB_plant 110 158 - -
Vium10515g00001 412 MobiDBLite consensus disorder prediction 239 270 - -
Vium10515g00001 412 SMART uba_6 112 150 IPR015940 -
Vium10515g00001 412 SUPERFAMILY PUG domain-like 293 408 IPR036339 -
Vium10515g00001 412 Gene3D - 303 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10515g00001 Vium-Chr10515 1085 12925 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10515g00001 95 412 C2H2 Transcription Factor Family AT1G04850 75.862 2.13e-150 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10515g00001 K24348 - gmx:100794687 650.588